<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12711

Description mediator of RNA polymerase II transcription subunit 9-like isoform X1
SequenceMDPYSGGSWMMIPSASNHNASSITSNQDHSHLHQQYHHQLQQQLQQPQQQQPQRHQQHHQHQSLASHFHLLHLVENLSEAIESGTRDQHSDALVNELTSHFEKCQQLLNSISVSINTKAMTVDGQKRKMEESEQLLNQRRDLISKYRSSIEDLVKSDR
Length158
PositionMiddle
OrganismNelumbo nucifera (Sacred lotus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Proteales> Nelumbonaceae> Nelumbo.
Aromaticity0.04
Grand average of hydropathy-1.054
Instability index61.29
Isoelectric point6.41
Molecular weight18299.92
Publications
PubMed=23663246

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12711
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.71|      13|      21|      27|      39|       1
---------------------------------------------------------------------------
   27-   39 (27.91/11.70)	QDHSHLHQQYH.HQ
   49-   62 (23.80/ 8.96)	QQQPQRHQQHHqHQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.23|      16|      25|      94|     109|       2
---------------------------------------------------------------------------
   94-  109 (28.32/17.30)	VNELTSHFEKCQQLLN
  122-  137 (26.90/16.13)	VDGQKRKMEESEQLLN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12711 with Med9 domain of Kingdom Viridiplantae
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