<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12679

Description U-box domain-containing protein 52-like isoform X2
SequenceMWPPPPGVHGERMHTPNKLIAVAIDKDRGSQIALKWTVDHLLARGQTVLLIHVKLKQSANSSGQSPTKSNQISDEAGSGNSELDPQTKELFLPFRVFCTRKDVQCHDVVLDDTDVVKAIVEYVNRTGIEVLILGATTRGGLLRFKVKDIPGGILKGVPDFCTVHVISKSGKIASTRAASRPAPFVHPLRHQLMQPASTKFAPFEGSTPSAASARGPYSGGPKPVCDPPPSTLQSDTMNIKSPFTHRKGPNGKPYEISLPDTDISYVSSGRPSIDNIYSSFSDGYDGGGPTPPRLSGFSDFETQSFDSTQFGRRSVDTLTPPELSLSSIESDRPSISQGPVDDMEAEMRRLKQELKQTMELYSTACREALTAKQKAMELQRWKQEEQRRLEEARLAEEAALALAEKEKAKSRAAIEHAEAAQRLAELEAQKRISAEMKALKEAEEKNKILNKLTNSDFRYRKYTIEEIESATDYFAQTRKIGEGGYGPVYKCYLDHTPVAVKVLRPDAAHGRQQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMSNGSLEDRLFHRGKTPPLSWQQRFRIAAEIATGLLFLHQSKPEPLVHRDLKPGNILLDRNFVSKISDVGLARLVPPSVADTVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDVYSLGIIFLQILTAKPPMGLTHYVDRAIEKGTFNEMLDPAIPDWPVDEALSLAKLSLQCSELRRKDRPDLGKVVLPQLERLRALAEDHTCPSLMYNSNISPNHSQISLSRDNLSYPNTMPSSYESSRSQ
Length788
PositionTail
OrganismNicotiana sylvestris (Wood tobacco) (South American tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.07
Grand average of hydropathy-0.468
Instability index49.28
Isoelectric point7.58
Molecular weight87506.50
Publications
PubMed=23773524

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12679
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      69.10|      20|      23|     397|     418|       1
---------------------------------------------------------------------------
  384-  408 (25.38/16.85)	EEQRRLEEARlaeeaALALAEKEKA
  409-  428 (24.84/13.34)	KSRAAIEHAE....aAQRLAELE.A
  429-  446 (18.89/ 8.67)	QKRISAE......mkALKEAE.EKN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.89|      11|      30|     290|     301|       5
---------------------------------------------------------------------------
  290-  301 (19.27/14.49)	TPPRLSgFSDFE
  319-  329 (20.63/10.34)	TPPELS.LSSIE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      31.59|      15|      30|     177|     198|       7
---------------------------------------------------------------------------
  187-  226 ( 7.60/12.70)	PlrhqlmqPASTkfapfegstpsAASargpysgGPKPVCD
  227-  245 (23.98/10.07)	P.......PPST.......lqsdTMN.......IKSPFTH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12679 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FEGSTPSAASARGPYSGGPKPVCDPPPSTLQSDTMNIKSPFTHRKGPNGKPYEISLPDTDISY
2) TQFGRRSVDTLTPPELSLSSIESDRPSISQGPVDDMEAEMRRLKQE
203
308
265
353










Molecular Recognition Features






MoRF SequenceStartStop




NANANA