<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12678

Description U-box domain-containing protein 33-like
SequenceMAILISALPALPEQHGRIVPHHFGISGSIETGGEIVEELQSPCTVDGKIFVAVGKELKENISTLLWTLRNSRGEKICILHIHQPAQLIPMVGAKFPASKVKEEEVRAYRQLERQKMHDILNEYLALCTNHGILVEKVVIENDDIKKGIVELIAQYGIKKLVMGAAADRHHSKRMTELRSKKAIFVRQEAHGSCHIWFVCKGFLIYERRFTIESIPSRESSMTCNGSEVSPPILPASPILDGMGQREYMKSLSFPQAQNNRVALANLDINSFQQARSVQSSTHGGIVTALSSPSGSGVLPKPRTQLRRVEIEGEVEGTSRSASQGSEDLPSSSNEEASIGISDSILEEGKGNADMYDQMKKAMAEATNAKREAYEESRRRQVAERAALEAKCTANESETSYKREQKKRKEIKELLAKQKQELENMKSHRDQVMEELRIAQEQKSELEQKVEELEQKIVSAVELLINLKNERDALLEERDHAVREAEELRKRREEQAAMSQSFQFVSEFSFSEIEEATHNFDPSLKVGEGGYGSVFRGLLRHTQVAIKMLHSNSSQGRMEFQQEVNVLSRMRHPNLVTLIGTFPEAWSLIYEYLPNGSLEDRLTRRDNTPPLSWQTRTRIAAEVCSALVFLHSNTPQRIVHGDLKPANILLDDNFVSKLGDFGIYRLIPSGGNSAHASMAMQYHRTNPKGTVVYMDPEFVEKGELTPMSDVYSFGIVLLRLLTGRPAMGIVKEVQYAIDKGNLKAVLDESAGEWPFVQAKQLAHLALRCCERNRTSRPDLANEVWRVLEPMRACCGTSSSFRLRSGEHCRVPSYFICPIFQEIMRDPHIAADGYTYEAEGLKAWLDSGHDDTSPMTNLKLAHRNLIPNHALRSAIQEWLHQP
Length880
PositionTail
OrganismNelumbo nucifera (Sacred lotus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Proteales> Nelumbonaceae> Nelumbo.
Aromaticity0.06
Grand average of hydropathy-0.452
Instability index52.25
Isoelectric point6.52
Molecular weight99004.63
Publications
PubMed=23663246

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12678
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      63.30|      22|      22|     359|     380|       1
---------------------------------------------------------------------------
  373-  393 (20.61/10.30)	YEES.RRRQ......vAE.raALEAKCTA
  396-  420 (20.42/10.13)	SETSyKREQkkRKEI.KE...LLAKQKQE
  421-  444 (22.28/11.75)	LENM.KSHR..DQVM.EElriAQEQKSE.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.89|      15|      23|     118|     132|       4
---------------------------------------------------------------------------
  118-  132 (27.00/15.84)	DILNEYLALCTNHGI
  143-  157 (24.89/14.13)	DIKKGIVELIAQYGI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12678 with Med32 domain of Kingdom Viridiplantae
Unable to open file!