<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12656

Description pre-mRNA-processing protein 40C-like
SequenceGLTLLADYFTYVQDINEDTDYQSFKKKWGHDSRFESLDRKDREVLLNERVLQLRKAAQEKAYAVRAAAISQFKSMLREREDITLNTRWSKVKDSLRDDPRYKSVKHEDREALFNEYLSELKAAEQEVARIAKAKHDEEEKLKERERALRKRKEREEQEVERVRSKARRKEAVESYQALLVEIIKDPQASWTESKPKLEKDPQGRAANPHLDQSDLEKLFREHVKILYERSAQEFKALLAEVITVEACSRETEDGKTVGNSWSTAKQLLKADPRYSKMPRKDRESLWRRYVEDIQRRQKSALDEVDKARSKGSSGSRRR
Length318
PositionUnknown
OrganismNicotiana sylvestris (Wood tobacco) (South American tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.07
Grand average of hydropathy-1.157
Instability index48.65
Isoelectric point9.35
Molecular weight37529.77
Publications
PubMed=23773524

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12656
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     324.01|      63|      64|      18|      80|       1
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   18-   73 (82.29/38.64)	............DTDYQSFKKKWGHDSRFES....LD.....RKDREVLLNERVLQL.RKAAQEKAYAVRAAAISQFK
   74-  140 (93.53/44.80)	SMLRERE.ditlNTRWSKVKDSLRDDPRYKS....VK.....HEDREALFNEYLSEL.KAAEQEVARIAKAKHDEEEK
  141-  176 (34.86/12.68)	..LKERE..............................ralrkRKEREEQEVERV..........RSKARRKEAVESYQ
  177-  235 (63.15/28.16)	ALLVEII..kdpQASWTESKPKLEKDPQGRAanphLD.....QSDLEKLFREHVKILyERSAQE............FK
  246-  290 (50.18/21.07)	ACSRETEdgktvGNSWSTAKQLLKADPRYSK....MP.....RKDRESLWRRYV........................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12656 with Med35 domain of Kingdom Viridiplantae
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