<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12656

Description pre-mRNA-processing protein 40C-like
SequenceGLTLLADYFTYVQDINEDTDYQSFKKKWGHDSRFESLDRKDREVLLNERVLQLRKAAQEKAYAVRAAAISQFKSMLREREDITLNTRWSKVKDSLRDDPRYKSVKHEDREALFNEYLSELKAAEQEVARIAKAKHDEEEKLKERERALRKRKEREEQEVERVRSKARRKEAVESYQALLVEIIKDPQASWTESKPKLEKDPQGRAANPHLDQSDLEKLFREHVKILYERSAQEFKALLAEVITVEACSRETEDGKTVGNSWSTAKQLLKADPRYSKMPRKDRESLWRRYVEDIQRRQKSALDEVDKARSKGSSGSRRR
Length318
PositionUnknown
OrganismNicotiana sylvestris (Wood tobacco) (South American tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.07
Grand average of hydropathy-1.157
Instability index48.65
Isoelectric point9.35
Molecular weight37529.77
Publications
PubMed=23773524

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12656
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     324.01|      63|      64|      18|      80|       1
---------------------------------------------------------------------------
   18-   73 (82.29/38.64)	............DTDYQSFKKKWGHDSRFES....LD.....RKDREVLLNERVLQL.RKAAQEKAYAVRAAAISQFK
   74-  140 (93.53/44.80)	SMLRERE.ditlNTRWSKVKDSLRDDPRYKS....VK.....HEDREALFNEYLSEL.KAAEQEVARIAKAKHDEEEK
  141-  176 (34.86/12.68)	..LKERE..............................ralrkRKEREEQEVERV..........RSKARRKEAVESYQ
  177-  235 (63.15/28.16)	ALLVEII..kdpQASWTESKPKLEKDPQGRAanphLD.....QSDLEKLFREHVKILyERSAQE............FK
  246-  290 (50.18/21.07)	ACSRETEdgktvGNSWSTAKQLLKADPRYSK....MP.....RKDRESLWRRYV........................
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12656 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




1) LLKADPRY
2) SLWRRYVEDIQRRQKSALDEVDKARS
3) SSGSRRR
267
284
312
274
309
318