<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12655

Description mediator of RNA polymerase II transcription subunit 4-like
SequenceMLQNVPHQLLQSPARLGLPTPSSPSVQNPNPPPKFSSQVSQPNQPLQQANILTTSTTSSMLLPLLPPLSRAQSLLIQMASLASRLFEVSPNRSHWLSAFRGSFPSFLPSATPVPQDSFPSSSKEILSVFTSLQTQLFEAVAELQEILDLQDEKQKVIREIRSKDSSILAFANKLKEAERVLDMLVDDYSDYRRPKRAKLENDTEESSVTTVATQLKLSDILSY
Length223
PositionMiddle
OrganismNicotiana sylvestris (Wood tobacco) (South American tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.06
Grand average of hydropathy-0.322
Instability index78.64
Isoelectric point6.15
Molecular weight24774.89
Publications
PubMed=23773524

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12655
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.89|      26|      33|       6|      33|       1
---------------------------------------------------------------------------
    6-   33 (46.31/23.21)	PHQLLQSPARLGLPTPSspSVQNPNPPP
   42-   67 (47.58/19.15)	PNQPLQQANILTTSTTS..SMLLPLLPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.04|      22|      32|     142|     163|       2
---------------------------------------------------------------------------
  142-  163 (35.89/24.77)	ELQE...ILD.LQDEKQKVIREIRSK
  173-  198 (28.15/18.14)	KLKEaerVLDmLVDDYSDYRRPKRAK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.53|      19|      49|      69|      87|       3
---------------------------------------------------------------------------
   69-   87 (27.93/11.08)	SRAQSLLIQMASLASRLFE
  101-  119 (31.90/13.45)	GSFPSFLPSATPVPQDSFP
  120-  138 (28.69/11.53)	SSSKEILSVFTSLQTQLFE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12655 with Med4 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LLQSPARLGLPTPSSPSVQNPNPPPKFSSQVSQPNQPLQQANIL
9
52










Molecular Recognition Features






MoRF SequenceStartStop




NANANA