<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12650

Description U-box domain-containing protein 52-like isoform X3
SequenceMFCKLRLIKREKMWLPNNKGSPANRRGNGTGVVAIAIDKDKGSQYAIKWATDNLVNRGQTLVLIHVVTKPASSSYGNCGGVHVVDGNLSAHGQNLEKQTKELFLTFHCFCTRKDIRCLDVILEDSDVTKALTEYVSSAAIQNLVLGASRHGFIRRLKVTDIPSTVSKGAPDFCTVYVISKSKISSVKNASRPAPMASPLYKQIQQLEEQVNSAGTTPTARTRAIHAGSVVDRSQRRSFISDESKKIGFGSRSPFDRRGILPSRIFSDLSEADTDLSFVSSGRPSTDHTSSMLFHDGMDSGRISQISTSSDSSFGSERLGPRGSELSSFNDFSSSSFETDDGEAEMRRLKMELQRTMDLYSTACKEALTAKQKSEELNVWRMEEEKRLEEARLAEEAAKLAAEKERDKCKVAMETAEAAQRLAELEAKRRVDAEMQALKEAEQKEKALMNLGQGDFRYRRYSIEEIEEATQFFTDSLKIGEGGYGPVYKCYLDHTPVAIKVLRPDAAQGRSQFQQEVEVLSRMRHPNMVLLLGACPEYGCLVYEYMANGSLEERLMRRGDKRSLSWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDHNYVSKISDVGLSRLVPPSTTEEVTQYRITSAAGTFCYIDPEYQQTGMLGVKSDVYSLGILLLQLVTAKPAMGITHYVSQCIETGEFKEALDPSVPDWPIEEALNFANLALQCAELRRKDRPDLGKVVLPELNRLRALTEENMGQLLIGGSAGPSPSHSQASISQEMSSDPQVRSGFSSKSVSNSSASQEKHSGSGDE
Length801
PositionTail
OrganismNicotiana sylvestris (Wood tobacco) (South American tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.06
Grand average of hydropathy-0.450
Instability index50.83
Isoelectric point6.79
Molecular weight88721.41
Publications
PubMed=23773524

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12650
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     105.02|      27|      28|     238|     265|       1
---------------------------------------------------------------------------
  238-  262 (37.15/20.57)	..............FIS...DESKKIGFGSRSPFDRRGILPS
  263-  300 (34.91/21.51)	RIfsdlseadtdlsFVS...SGRPSTDHTSSMLF.HDGMDSG
  301-  327 (32.96/17.65)	RI...............sqiSTSSDSSFGSERLGPRGSELSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     109.33|      27|      28|     390|     417|       2
---------------------------------------------------------------------------
  390-  416 (41.10/25.55)	ARLAEEAAKLAAEKERDKCKVAMETAE
  418-  441 (31.74/18.14)	...AQRLAELEAKRRVDAEMQALKEAE
  710-  734 (36.49/21.90)	ANLALQCAELRRKDRPDLGKVVLPE..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     102.13|      24|      27|     153|     176|       7
---------------------------------------------------------------------------
  115-  136 (26.16/16.90)	IRCLDVILEDSDVTKALTEYVS..
  153-  176 (42.22/32.41)	IRRLKVTDIPSTVSKGAPDFCTVY
  178-  200 (33.75/24.23)	ISKSKISSV.KNASRPAPMASPLY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      29.90|       9|     260|     476|     485|       8
---------------------------------------------------------------------------
  476-  485 (13.50/14.25)	LKIGeGGYGP
  749-  757 (16.40/10.24)	LLIG.GSAGP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12650 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QLLIGGSAGPSPSHSQASISQEMSSDPQVRSGFSSKSVSNSSASQEKHSGSGDE
748
801










Molecular Recognition Features






MoRF SequenceStartStop




1) MFCKLRLIKR
2) QVRSGFSSK
1
775
10
783