<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12647
Description |
ATP-dependent DNA helicase Q-like 4A isoform X3 |
Sequence | MSKDKLPKVNWTQHATAHENFSCQDKFLTSNFLFSLPTQKPCVREQMNARSMACQVRSVTKLETEKAWKLLNSLKLSSKSYTRPGKTLPLTKENKTFSQHSHNTHVPRASDVNYASARCTPLHQGVDENSEYSDTTRYAGNRFPSHSSGVAETGNVVNRQNGADTSVGNNSHSRGIVGISSNHAIGVSKTRESDSTYADGTEEDDILQNIDIDQIVEHYQTNCTPQPSVSRCPPITPVTDSKCLAGSGETNLPPELSLNCNHGLKLGLCPEALDHLQEMKDRLINISNDLLDNVSELSLEQVEMLRQERSQLKLQIQHLEKFLQTASGNEERRMSQFSASTQTSAFQYETPRAVPSRIDPIRLDTQFHGYNESGGFGNWNSSSLSFDVTGGYGLSTAPVEREPYIPKYLDVKYTEGSNDKKWSSRDFPWTKKLEADNKKVFGNPSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQVNIPAAYLSSNMEWTEQQEILRELNSDVCKYKFLYVTPEKVAKSDVLLRHLESLHTRESLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPTVPVLALTATATMSVKEDVVQALGLANCIIFRQSFNRPNLRYSVIPKTKKCLEDIDNFIKKFHFDQCGIIYCLSRMDCERVAEKLQEYGHKAAFYHGSMEGAQRANIQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGLPSSCVLYYSYSDYIRVKHMISQGTVDQNSFGSGYGRSNVAASGRILETNVENLLRMVSYCENDVDCRRLLQLIHFGEKFESTNCRKTCDNCSKIQKCIEKDVTEVAKQLVELVKMTGQKFSSAHVLEVYRGSLSQYVKKHRHESLRLHGAGKHLAKGEASRVLRHLVTEDILVEDVKKSDLYGSVSSVLKVNESKAYNLFSGAQTMRLRLPSSVTQSKLGKFEATPAKGSLTSGKQSPPRTDPSAVPQSPVDTNLSAKLYTALRRLRTLLVKEAGDGVMAYHIFGDATMQQISIKVPRTTDELLDINGIGKVKITKYGDRVLETIEATINEHYKSAKTNSSGNDNTDSGKKRRNSINVQNANSKDEEDFTGSTGRSKKRVLKKQNKNPEVIDYRDLGYFDECMDGDIDFDESMMP |
Length | 1176 |
Position | Unknown |
Organism | Nicotiana sylvestris (Wood tobacco) (South American tobacco) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae>
asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae>
Nicotiana.
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Aromaticity | 0.07 |
Grand average of hydropathy | -0.541 |
Instability index | 42.33 |
Isoelectric point | 8.32 |
Molecular weight | 131699.32 |
Publications | PubMed=23773524
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Function
Annotated function |
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GO - Cellular Component | |
GO - Biological Function | 3'-5' DNA helicase activity GO:0043138 IEA:InterPro
ATP binding GO:0005524 IEA:UniProtKB-KW
hydrolase activity GO:0016787 IEA:UniProtKB-KW
nucleic acid binding GO:0003676 IEA:InterPro
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GO - Biological Process | DNA recombination GO:0006310 IEA:InterPro
DNA repair GO:0006281 IEA:InterPro
DNA replication GO:0006260 IEA:InterPro
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Interaction
Repeat regions
Repeats |
>MDP12647
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 69.48| 19| 35| 960| 978| 1
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960- 978 (33.83/21.14) LFSGAQTMRLRLPSSVTQS
992- 1010 (35.65/22.69) LTSGKQSPPRTDPSAVPQS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 49.50| 12| 35| 222| 233| 2
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222- 233 (25.48/19.18) NCTPQPSVSRCP
259- 270 (24.02/17.55) NCNHGLKLGLCP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 69.76| 16| 28| 134| 150| 3
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114- 126 (18.26/ 8.35) ....YASARCTPLHQGV
134- 150 (27.72/23.54) DTTrYAGNRFPSHSSGV
164- 176 (23.78/13.92) DTS.V.GNN..SHSRGI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 108.73| 35| 39| 805| 842| 4
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805- 842 (56.97/42.67) RileTNVENLLRMVSYCENDVD..CRRLLQLIHF.GEKFES
846- 883 (51.76/31.43) R...KTCDNCSKIQKCIEKDVTevAKQLVELVKMtGQKFSS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 32.26| 11| 23| 918| 930| 5
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918- 930 (13.88/15.07) GEASRVLRhlVTE
944- 954 (18.38/10.82) GSVSSVLK..VNE
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 45.02| 15| 39| 617| 631| 6
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617- 631 (25.97/19.72) EDV...VQALGLANC.IIF
653- 671 (19.05/12.30) EDIdnfIKKFHFDQCgIIY
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 66.92| 18| 40| 370| 406| 7
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370- 389 (30.00/49.41) YNESGGFGNWnsSSLSFDVT
413- 430 (36.92/12.81) YTEGSNDKKW..SSRDFPWT
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 138.26| 42| 409| 679| 753| 8
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706- 753 (68.92/96.49) NIQKQWSKDEINIICATvafgmGINKPDVrFVIHHSLPKSIE....GYHQEC
1118- 1163 (69.34/32.38) NVQNANSKDEEDFTGST.....GRSKKRV.LKKQNKNPEVIDyrdlGYFDEC
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