<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12626

Description U-box domain-containing protein 34-like isoform X1
SequenceMKVNVDGDTGGSPTSTTATVTVAVAVKSAEGKGSQRAVKWAVEKLLPKAHRFVFIHVMPTITTIPTPSGESTLVDELEANVVKLYIEDKRAQCEEIFIPFKILCKRKNVETLVLEGNNPATVLLKYVNDSGIKSLVLGSYSPNYFSRKLKGSSVPSIILKHAPECCDVYVVSSNKLMTNSLNPLLATEGDLPTINKQKSSASSASIDGVSHSRSSSLASSHLNFPAFLDGNSSNYASLQQKLNQNLEDVTTGLETVKECHISTSSEQLDIQDEVERVRLELQTTLAMYNQTCEDLIHTQNKVQLFSSEYLEEYRKVNAAKKREENLRKIAAEEKERHLEAEKEVETARKLLSEETYERQIAELKALQQSLEKKKTVDALLSSDHRYRRLTREEIEVATDYFCESKMIGEGAYGKVYKGDLDHTPVAIKVLCSDASEKKEEFLREVEVLSQLHHPHIVLLLGACPENGCLVYEYMENGSLEDCILERNSKPFPWFSRFRILFEVACALAFLHNSKPEPIVHRDLKPGNILLDKNFVSKIGDVGLAKIISDVVPESVTEYRNSVLAGTLGYMDPEYQRTGTLRPKSDLYAFGIITLQLLAACRPNGLIMVFENAINSNLLVDILDKSVPDWPLMEAEELARMALKCCSLRCRDRPDLETEVLPLLKRLSEFADMRTKVEKNIIQAPSPYLCPIVQEVMEDPQIAADGFTYEHRAIKLWLTRHSVSPVTKQILQHKMVTPNRTLRLAIQEWRSQVTSFRPRS
Length759
PositionTail
OrganismNicotiana sylvestris (Wood tobacco) (South American tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.06
Grand average of hydropathy-0.297
Instability index46.33
Isoelectric point6.13
Molecular weight85318.80
Publications
PubMed=23773524

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12626
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.04|      16|      20|      99|     114|       1
---------------------------------------------------------------------------
   99-  114 (27.74/16.86)	PFKILCKRKN...VETLVL
  119-  137 (19.29/ 9.72)	PATVLLKYVNdsgIKSLVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.50|      19|      20|     317|     336|       2
---------------------------------------------------------------------------
  317-  336 (26.64/22.71)	NAAKKREENlRKIAAEEK.ER
  339-  358 (25.85/16.45)	EAEKEVETA.RKLLSEETyER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     154.68|      44|     135|     449|     492|       4
---------------------------------------------------------------------------
  449-  492 (84.20/47.97)	SQLHHPHIV..LLLGACPENG.CLVYEYMENGSLEDCILERNSKPFP
  584-  630 (70.48/39.15)	SDLYAFGIItlQLLAACRPNGlIMVFENAINSNLLVDILDKSVPDWP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.54|      24|     331|      29|      52|       6
---------------------------------------------------------------------------
   29-   52 (42.67/32.75)	AEGKGSQRAV..KWAVEKLLPKAHRF
  361-  386 (34.86/25.33)	AELKALQQSLekKKTVDALLSSDHRY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.94|      15|     258|     293|     315|       7
---------------------------------------------------------------------------
  276-  290 (24.45/27.72)	RVRLELQTTLAMYNQ
  301-  315 (24.49/ 9.83)	KVQLFSSEYLEEYRK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12626 with Med32 domain of Kingdom Viridiplantae
Unable to open file!