<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12625
Description |
mediator of RNA polymerase II transcription subunit 33A-like |
Sequence | MAAMVSSVQIQSNLWDGVMELTKSAQQKGTDPLMWAIQLSSNLNSAGLSMPSTDVANLLVSHICWANNVPIAWKFLEKALTLRVVPPMFVLALLSTRVIPARRSYPVAYRLYMELLKRYAFSLASLINGPNYQKIMEAINDTLHLYQIFGLQGSESGLIVVEFVFAIVWELLDASLDDEGLMELTAEKKSRWPITSQDMGLNNHDGFAGGRTEKHEGLCKMNTVMAIEIIGEFFRDKVTSAILYLARKNMPGHWESFTQNLRLLVSNSSALRNSKNISPEALLQLTSDNHVVLSRKRKTSSQKKFHAVVVSGSLASSADQCHGASPSVLWLPFDLFLEDTIDGSQVAATSAAETLTGLVKALQAVNSTTWQDTFLGLWIAALRLVNRERDPSEGPVPRLDTCLCLLLSITPLAIANLIEEEERNCSSTNQTKESSRKRHQDLLSTLQQLDDYEGLLTPPLPAAPLANQAAAKAMMFLSGLRVGSGYFEGMSLNDMPVNCAGNLRHLIVEACIARNILDTSAYLWPGYVKGRCDQVPRSVSGQMPGWSSLMKGSPLTPPMVSSLVSTPASSLAEIEKIYDIAVNGSDDDKISAATILCGASLARGWNIQEHTVLFITRLLSPPVSANYSGTESHLIGYARFLNVLLIGVSSIDCVQIVSLHGLVPQLAGALMPICEAFGSCAPNVTWIVMSEEISSHAIFSNAFTLLLKLWRFDQPPRENVMDVVPVGSRLTPEYLLLVRNSQLASSDDLQKDQSKIKRLSRLSSPLSGEPIFMDSFPKLKLWYRQHQACIGSPLSGLLPGTPVHQIVEALLNFMFRKINRTGQSLAPTTSGSSSSSGPGNEDVFLHLKLPAWDILEAVPFVLDAALTACAHGRLSPRELATGLKDLADFLPASLATIVSYFSAEVTRGIWKLASMNGTDWPSPAANLATVEQQIKKILAATGVNVPSLTVGGNSPATLPLPLAALVSLTITYKLDRSTDRFLNLMGPALSNLATACPWPCMPVMVALWAQKVKRWSDFLVFSASRTVFHHNSDAVVQLLRMCFAATLGLTTSSIASNGGVGALLGHGFGSHFSGGISPVAPGILYLRIHRAVRNAMFMTEEVVSLLMHFVRDIASSGLPAEKLEKLKKSKYGMRYGQVSLAAAMTRVKLAASLGASLVWITGGVALVQSLIKETLPSWFISAHGSEPSGGMSGGLVAMLGGYALAYFAVLSGTFAWGVDSSSPASKHRSIILGGHLEFLASALDGKISLGCNKATWRAYVSGFVSLMVGSTPGWMLEVDVDILKRLSMGLKQWNEEELALALLGSSGIGAMGTAAEMIIEGGFNFVR |
Length | 1327 |
Position | Tail |
Organism | Nicotiana sylvestris (Wood tobacco) (South American tobacco) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae>
asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae>
Nicotiana.
|
Aromaticity | 0.07 |
Grand average of hydropathy | 0.181 |
Instability index | 46.21 |
Isoelectric point | 7.57 |
Molecular weight | 143425.31 |
Publications | PubMed=23773524
|
Function
Annotated function |
|
GO - Cellular Component | integral component of membrane GO:0016021 IEA:UniProtKB-KW
mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | regulation of phenylpropanoid metabolic process GO:2000762 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP12625
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 45.18| 12| 29| 760| 771| 1
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760- 771 (22.16/11.07) SRLSSPLSGEPI
792- 803 (23.02/11.81) SPLSGLLPGTPV
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 128.48| 32| 34| 1184| 1217| 2
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1152- 1182 (21.42/ 8.03) ..SLGAS..LVWITGGVALvqsliketlpSWF...IS...A..
1186- 1217 (59.97/44.04) EPSGGMSGGLVAMLGGYAL..........AYFA.VLSGTFAWG
1219- 1250 (47.08/26.08) DSSSPASKHRSIILGGH.L..........EFLAsALDGKISLG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 90.25| 27| 34| 51| 83| 3
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51- 77 (50.25/39.61) PSTDVANLLVSHICWA.NNVPIAWK.FLE
86- 114 (40.01/18.82) PPMFVLALLSTRVIPArRSYPVAYRlYME
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 360.70| 92| 246| 822| 913| 4
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822- 913 (153.14/90.71) GQS...................LAPTTSGSSSSSGPGNEDVFLHLKL.....PAWDILEAV.....PFVLDAALTACAHGRLSP..RELATG................LKDLADFLPASLATIVSYFSAEVTRGIWKL..A
916- 1044 (104.99/59.67) NGTdwpspaanlatveqqikkiLAATGVNVPSLTVGGNSPATLPLPL.....AAL.VSLTI.....TYKLDRS.TDRFLNLMGPalSNLATAcpwpcmpvmvalwaqkVKRWSDFLVFSASRTVFHHNSDAVVQLLRMcfA
1065- 1150 (102.56/58.10) GHG...................FGSHFSGGISPVAPG....ILYLRIhravrNAMFMTEEVvsllmHFVRDIASSGLPAEKLEK.lKKSKYG................MR....YGQVSLA.......AAMTR..VKL..A
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 39.68| 11| 30| 338| 348| 11
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338- 348 (18.87/11.69) EDTIDGSQVAA
371- 381 (20.81/13.72) QDTFLGLWIAA
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