<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12622

Description uncharacterized protein LOC104227178 isoform X7
SequenceMDSADWRTQLLPDSRQRIVNNITETLKRQLSVTREEGVQELKKIAVGFEEKIYTAATSQPDYLQKISLKILTMETKSHNPMTNLSNAASSGQNAHDPGTARAGAAAGAMDAADWRTQLLPDFRQSIVNKITETLMRHLPVTGEEGVQELKKIALRFEEKIYTAAISQPDYLRKISLKMLTMETKSQHPTTNSINAASSGQNALGPDSCQEREITQGSMKRKREDWGDNVEEHNDQILPTFTCEICTEVVPITKKFNNFHSCNHSFCSKCIERHVEVKIQLRIADIQCPYVDCGKLLDPLVCRTMIPLSIFEKWCDLLCKQAHLGFEKCYCPYQDCGELIVKECGDVVGKSECPNCRRLICFQCGLPWNVCEENGCSKVNDTLFKELVEQKQWTKCPSCNMYVERIAGCNHMQCRFSLSLSLSLSLSLSLHMVLTFTLI
Length438
PositionTail
OrganismNicotiana sylvestris (Wood tobacco) (South American tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.06
Grand average of hydropathy-0.342
Instability index38.02
Isoelectric point6.60
Molecular weight49476.42
Publications
PubMed=23773524

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
metal ion binding	GO:0046872	IEA:UniProtKB-KW
transcription coactivator activity	GO:0003713	IEA:InterPro
transferase activity	GO:0016740	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12622
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.70|      11|      15|      78|      88|       1
---------------------------------------------------------------------------
   78-   88 (21.08/15.45)	HNPMTNLSNAA
   95-  105 (20.63/14.97)	HDPGTARAGAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     303.49|      77|     107|       1|      94|       2
---------------------------------------------------------------------------
    1-   77 (149.89/87.19)	MDSADWRTQLLPDSRQRIVNNITETLKRQLSVTREEGVQELKKIAVGFEEKIYTAATSQPDYLQKISLKILTMETKS
  109-  185 (153.60/95.72)	MDAADWRTQLLPDFRQSIVNKITETLMRHLPVTGEEGVQELKKIALRFEEKIYTAAISQPDYLRKISLKMLTMETKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.17|      12|      23|     261|     274|       3
---------------------------------------------------------------------------
  261-  272 (23.98/ 8.41)	CNHSFCSKCIER
  287-  298 (24.19/ 8.39)	CPYVDCGKLLDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.24|      38|      40|     316|     355|       4
---------------------------------------------------------------------------
  316-  355 (69.06/38.95)	LLCKQAHLGFEkcYCPYQDCGEL...IVKECGDVVGKSECPNC
  358-  398 (70.18/34.13)	LICFQCGLPWN..VCEENGCSKVndtLFKELVEQKQWTKCPSC
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12622 with Med15 domain of Kingdom Viridiplantae
Unable to open file!