<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12616

Description uncharacterized protein LOC104227178 isoform X1
SequenceMDSADWRTQLLPDSRQRIVNNITETLKRQLSVTREEGVQELKKIAVGFEEKIYTAATSQPDYLQKISLKILTMETKSHNPMTNLSNAASSGQNAHDPGTARAGAAAGAMDAADWRTQLLPDFRQSIVNKITETLMRHLPVTGEEGVQELKKIALRFEEKIYTAAISQPDYLRKISLKMLTMETDSQNPMTNSANAASSGQNAHDPGTAPAGAAAGDMDAVDWRTQLLPDSRQRIVNKITETLKRHLPVTGEEGVQELKKIALRFEEKIYTAAISQPDYLRKISLKMLTMETKSQHPTTNSINAASSGQNALGPDSCQEREITQGSMKRKREDWGDNVEEHNDQILPTFTCEICTEVVPITKKFNNFHSCNHSFCSKCIERHVEVKIQLRIADIQCPYVDCGKLLDPLVCRTMIPLSIFEKWCDLLCKQAHLGFEKCYCPYQDCGELIVKECGDVVGKSECPNCRRLICFQCGLPWNVCEENGCSKVNDTLFKELVEQKQWTKCPSCNMYVERIAGCNHMQCRFSLSLSLSLSLSLSLHMVLTFTLI
Length546
PositionTail
OrganismNicotiana sylvestris (Wood tobacco) (South American tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.06
Grand average of hydropathy-0.391
Instability index38.13
Isoelectric point6.52
Molecular weight61280.61
Publications
PubMed=23773524

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
metal ion binding	GO:0046872	IEA:UniProtKB-KW
transcription coactivator activity	GO:0003713	IEA:InterPro
transferase activity	GO:0016740	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12616
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     662.60|     107|     107|      77|     183|       1
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    1-   75 (137.46/104.43)	.................................M..DSADW.......RTQLLPDSRQRIVNNITETLKRQLSVTREEGVQELKKIAVGFEEKIYTAATSQPDYLQKISLKILTMET
   77-  183 (227.18/178.07)	SHNPMTNLSNAASSGQNAHDPGTARA.GAAAGAM..DAADW.......RTQLLPDFRQSIVNKITETLMRHLPVTGEEGVQELKKIALRFEEKIYTAAISQPDYLRKISLKMLTMET
  185-  291 (228.54/179.19)	SQNPMTNSANAASSGQNAHDPGTAPA.GAAAGDM..DAVDW.......RTQLLPDSRQRIVNKITETLKRHLPVTGEEGVQELKKIALRFEEKIYTAAISQPDYLRKISLKMLTMET
  293-  360 (69.41/48.57)	SQHPTTNSINAASSGQNALGPDSCQErEITQGSMkrKREDWgdnveehNDQILPTFTCEICTEV.......VPIT..........................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     148.67|      34|      40|     395|     434|       2
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  395-  422 (50.19/24.34)	...............CP....YVDCGKLLDPLVC.RTMIPLSIFEK.WC
  423-  458 (35.19/25.32)	DLLCKQahlgfekcyCP....YQDCGELIVK.EC.GDVVGKS.......
  460-  483 (31.11/12.01)	...............CP......NCRR....LICfQCGLPWNVCEEnGC
  488-  529 (32.17/14.24)	DTLFKElveqkqwtkCPscnmYVERIAGCNHMQC.RFSLSLSL......
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12616 with Med15 domain of Kingdom Viridiplantae
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