<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12611

Description mediator of RNA polymerase II transcription subunit 27
SequenceMQQPTPQPHTAAGPGASGAESSQANGDAPPKQVAMALERLGQASRLIADIRLGADRLLEALFVAAQPQHSSKPLHLILKEEASMRQHLQDLRSVGRQLEDSGVLNDSLRSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFNDQKRRFFPHLDTNAGEEGATKKLCGPPSSDQEETCEPKTVSEVLTHLKMEVPNVTTFSYQRLDWLKRSTSLPSSTSENSIELSKDNTFQSTTTLRQGSSDDVVPDKVAIIELLIPSVFRAIVSVSPAGSLDPDALAFFSPDEGGSYVHARGFSVHHVFRYITEHAAMALQHFTGVDTETALLSLLLWVCSYQTLFSKVCSKCSRLLSMDKESAMLLPPVYRPYRNFCAGKFLSKSVSKDDISVDSTQSFHIDCFSEEA
Length415
PositionTail
OrganismNicotiana sylvestris (Wood tobacco) (South American tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.07
Grand average of hydropathy-0.280
Instability index48.00
Isoelectric point6.23
Molecular weight45389.79
Publications
PubMed=23773524

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12611
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     106.55|      25|      27|     237|     262|       1
---------------------------------------------------------------------------
  206-  230 (33.06/19.50)	MEVPNVTTFsyQRLDWLKRSTS...LPS
  237-  262 (36.68/27.11)	IELSKDNTF..QSTTTLRQGSSDDvVPD
  267-  290 (36.82/22.51)	IELLIPSVF..RAIVSVSPAGSLD..PD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.17|      25|      32|     138|     166|       3
---------------------------------------------------------------------------
  138-  166 (38.18/29.52)	AGQAGASavdrTRLALKAFNDQKRRFFPH
  171-  195 (45.99/26.19)	AGEEGAT....KKLCGPPSSDQEETCEPK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12611 with Med27 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MQQPTPQPHTAAGPGASGAESSQANGDAPPKQVAM
1
35










Molecular Recognition Features






MoRF SequenceStartStop




NANANA