<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12605

Description pre-mRNA-processing protein 40C-like isoform X3
SequenceMASPAWLPQEMQSSSSQTSGMSLATGEPTTSSSTPNADSTQEAVQGKFIPPPGYSAGRASFSYVNASVPSGSSQQSSSSPVIPSTSSGSSASLQPPIPGQSANVGSSFSYNISHADNNFSRGLQFSTSPLRPVSPNQLVDVKNSSPAASLQPPLPLVSTRLSSFIPGSAAPAASPLSGSNLSFNGSPQMVQTDQTMKPSFSQAGHMSSGSSTAAFPTSHLGSPNIRMPHAPQFQVPAGVPRSPVTPGPPGLGPVIPSSSNVTATASPGGPSLSLRPNGPPVPVLANPPVQQQIYSPYLSASPMAPTQGPWLQPSPVTTMLRPPFPSHPAGFAVPFPLSATGAPRSSATLPDTRPPGVASVATPPGVPTTATQSIPALGLQPELPPGVDSAKHVNDADTIEGAPTSEQLETWTAHRTETGAIYYYNSLTGESTYEKPAGFSGEPAKVAAQPTPVSWEKLAGTDWALVTTNDGQKYYYNTKTKLSSWQIPNDVTELKKKHEADALQAQSTSMPNANALTEKGSSPISLSIPAVNTGGRDATTLRSSVVPGSSALDLVKKKLMDAGATAAASSPTPASSGVISSELNGSEALESTARAPQKENSKDKSKEANDNGNMSESSSDSEDDESVPTKEDCIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARKALFEHYVKTRADEERKEKRAAQKAAVEGFKHLLEEAKEVYLVT
Length718
PositionUnknown
OrganismNicotiana sylvestris (Wood tobacco) (South American tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.06
Grand average of hydropathy-0.467
Instability index61.82
Isoelectric point6.26
Molecular weight74941.42
Publications
PubMed=23773524

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12605
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     391.02|      54|      54|      53|     106|       1
---------------------------------------------------------------------------
    2-   53 (34.21/ 6.72)	........ASPA.WLPQEMQ.SS..S.SQ..TSGMSLAT......gePT......T........SS.........STpnADSTQeavqgkfiPP.PG.......
   54-  106 (90.61/30.61)	.YSAG..RASFS.YVNASVP.SG..S.SQ..QSSSSPVI........PS......T........SS.........GS..SASLQ........PPIPGQSANVGS
  107-  163 (48.15/12.63)	.........SFS.Y.NISHA.DN..NfSRglQFSTSPLR........PV......SpnqlvdvkNS.........SP..AASLQ........PPLPLVSTRLSS
  167-  222 (45.03/11.31)	GSAAP..AAS.........PlSG..S.NL..SFNGSPQMvqtdqtmkPSfsqaghM........SS.........GS..STAAF........PT.....SHLGS
  224-  286 (57.57/16.62)	NIRMP..HAPQF.QVPAGVP.RSpvT.PG..PPGLGPVI........PS...............SSnvtataspgGP..SLSLR.....pngPPVP.VLAN...
  290-  333 (57.52/16.60)	....Q..QQIYSpYLSAS.P.MA..P.TQ..GPWLQPS.........PV......T........T................MLR........PPFPSHPAGFAV
  337-  389 (57.94/16.77)	LSATGapRSSAT.LPDTRPP.GV..A.S....VATPPGV........PT......T........AT.........QSipALGLQ........PELP...PGVDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     151.89|      45|      46|     502|     547|       2
---------------------------------------------------------------------------
  448-  488 (32.03/10.43)	...AQPT..............PVSweklagtdWALVTTND..GQKyyynTKTKLSSWQIP
  502-  547 (71.45/34.74)	ALQAQSTSMPNANAlTEKGSSPIS........LSIPAVNT..GGR....DATTLRSSVVP
  551-  591 (48.40/19.21)	ALDLVKKKLMDAGA.TAAASSPTP........ASSGVISSelNGS....EA..LES....
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12605 with Med35 domain of Kingdom Viridiplantae
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