<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12602

Description pre-mRNA-processing protein 40C-like isoform X2
SequenceMASPAWLPQEMQSSSSQTSGMSLATGEPTTSSSTPNADSTQEAVQGKFIPPPGYSAGRASFSYVNASVPSGSSQQSSSSPVIPSTSSGSSASLQPPIPGQSANVGSSFSYNISHADNNFSRGLQFSTSPLRPVSPNQLVDVKNSSPAASLQPPLPLVSTRLSSFIPGSAAPAASPLSGSNLSFNGSPQMVQTDQTMKPNRRVDIAHEMGAMTSPPSVMQSFSQAGHMSSGSSTAAFPTSHLGSPNIRMPHAPQFQVPAGVPRSPVTPGPPGLGPVIPSSSNVTATASPGGPSLSLRPNGPPVPVLANPPVQQQIYSPYLSASPMAPTQGPWLQPSPVTTMLRPPFPSHPAGFAVPFPLSATGAPRSSATLPDTRPPGVASVATPPGVPTTATQSIPALGLQPELPPGVDSAKHVNDADTIEGAPTSEQLETWTAHRTETGAIYYYNSLTGESTYEKPAGFSGEPAKVAAQPTPVSWEKLAGTDWALVTTNDGQKYYYNTKTKLSSWQIPNDVTELKKKHEADALQAQSTSMPNANALTEKGSSPISLSIPAVNTGGRDATTLRSSVVPGSSALDLVKKKLMDAGATAAASSPTPASSGVISSELNGSEALESTARAPQKENSKDKSKEANDNGNMSESSSDSEDDESVPTKEDCIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARKALFEHYVKTRADEERKEKRAAQKAAVEGFKHLLEEAKEVYLVT
Length739
PositionUnknown
OrganismNicotiana sylvestris (Wood tobacco) (South American tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.06
Grand average of hydropathy-0.467
Instability index61.99
Isoelectric point6.30
Molecular weight77251.07
Publications
PubMed=23773524

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12602
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     424.44|      54|      54|      53|     106|       1
---------------------------------------------------------------------------
    2-   53 (33.38/ 6.18)	.......ASPA.WLPQEMQSSS.SQ..TSGMSLATgePTT............SSSTpnADSTQeavqgkfiPP..PG..........
   54-  106 (87.71/29.35)	.YS.AGRASFS.YVNASVPSGS.SQ..QSSSSPVI..PST............SSGS..SASLQ........PPI.PG.QSAN..VGS
  107-  163 (46.44/11.75)	........SFS.Y.NISHADNNfSRglQFSTSPLR..PVS....pnqlvdvkNSSP..AASLQ........PPL.PL.VSTR..LSS
  167-  219 (49.80/13.18)	GSA.AP........AASPLSGS.NL..SFNGSPQM..VQTdqtmkpnrrvdiAHEM..GAMTS........PP........S..VMQ
  220-  260 (50.38/13.43)	SFSqAGHMS..................SGSSTAAF..PTS............HLGS..PNIRM........PHA.PQ.FQVP..AGV
  264-  312 (56.23/15.92)	PVT.PGPPGLG.PV...IPSSS.NV..TATASP....................GGP..SLSLR.....pngPPV.P..VLANppVQQ
  314-  354 (51.37/13.85)	........IYSpYLSAS.PMAP.TQ..GPWLQPS...PVT............T.......MLR........PPF.PS.HPAG..FAV
  360-  411 (49.13/12.89)	ATG.APRSSAT.LPDTRPPGVA.S....VATPPGV..PTT............ATQSipALGLQ........PELpPGvDSA......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     151.89|      45|      46|     523|     568|       2
---------------------------------------------------------------------------
  469-  509 (32.03/11.70)	...AQPT..............PVSweklagtdWALVTTND..GQKyyynTKTKLSSWQIP
  523-  568 (71.45/38.95)	ALQAQSTSMPNANAlTEKGSSPIS........LSIPAVNT..GGR....DATTLRSSVVP
  572-  612 (48.40/21.53)	ALDLVKKKLMDAGA.TAAASSPTP........ASSGVISSelNGS....EA..LES....
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12602 with Med35 domain of Kingdom Viridiplantae
Unable to open file!