<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12600

Description uncharacterized protein LOC104227178 isoform X9
SequenceMDSADWRTQLLPDSRQRIVNNITETLKRQLSVTREEGVQELKKIAVGFEEKIYTAATSQPDYLQKISLKILTMETKSHNPMTNLSNAASSGQNAHDPGTARAGAAAGAMDAADWRTQLLPDFRQSIVNKITETLMRHLPVTGEEGVQELKKIALRFEEKIYTAAISQPDYLRKISLKMLTMETDSQNPMTNSANAASSGQNAHDPGTAPAGAAAGDMDAVDWRTQLLPDSRQRIVNKITETLKRHLPVTGEEGVQELKKIALRFEEKIYTAAISQPDYLRKISLKMLTMETKSQHPTTNSINAASSGQNALGPGKGNYSRKHEEKERRLGR
Length331
PositionTail
OrganismNicotiana sylvestris (Wood tobacco) (South American tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.04
Grand average of hydropathy-0.665
Instability index36.97
Isoelectric point9.17
Molecular weight36667.07
Publications
PubMed=23773524

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12600
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     164.66|      20|      20|      80|      99|       1
---------------------------------------------------------------------------
   80-   99 (42.16/24.32)	PMTNLSNAASSGQNAHDPGT
  102-  116 (23.61/10.94)	.....AGAAAGAMDAADWRT
  188-  207 (43.81/25.51)	PMTNSANAASSGQNAHDPGT
  210-  224 (23.41/10.80)	.....AGAAAGDMDAVDWRT
  296-  314 (31.66/16.75)	PTTNSINAASSGQNALGPG.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     442.15|      70|     106|     117|     186|       2
---------------------------------------------------------------------------
    9-   78 (143.03/107.26)	QLLPDSRQRIVNNITETLKRQLSVTREEGVQELKKIAVGFEEKIYTAATSQPDYLQKISLKILTMETKSH
  117-  186 (148.96/112.02)	QLLPDFRQSIVNKITETLMRHLPVTGEEGVQELKKIALRFEEKIYTAAISQPDYLRKISLKMLTMETDSQ
  225-  294 (150.15/112.97)	QLLPDSRQRIVNKITETLKRHLPVTGEEGVQELKKIALRFEEKIYTAAISQPDYLRKISLKMLTMETKSQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12600 with Med15 domain of Kingdom Viridiplantae
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