<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12600

Description uncharacterized protein LOC104227178 isoform X9
SequenceMDSADWRTQLLPDSRQRIVNNITETLKRQLSVTREEGVQELKKIAVGFEEKIYTAATSQPDYLQKISLKILTMETKSHNPMTNLSNAASSGQNAHDPGTARAGAAAGAMDAADWRTQLLPDFRQSIVNKITETLMRHLPVTGEEGVQELKKIALRFEEKIYTAAISQPDYLRKISLKMLTMETDSQNPMTNSANAASSGQNAHDPGTAPAGAAAGDMDAVDWRTQLLPDSRQRIVNKITETLKRHLPVTGEEGVQELKKIALRFEEKIYTAAISQPDYLRKISLKMLTMETKSQHPTTNSINAASSGQNALGPGKGNYSRKHEEKERRLGR
Length331
PositionTail
OrganismNicotiana sylvestris (Wood tobacco) (South American tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.04
Grand average of hydropathy-0.665
Instability index36.97
Isoelectric point9.17
Molecular weight36667.07
Publications
PubMed=23773524

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12600
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     164.66|      20|      20|      80|      99|       1
---------------------------------------------------------------------------
   80-   99 (42.16/24.32)	PMTNLSNAASSGQNAHDPGT
  102-  116 (23.61/10.94)	.....AGAAAGAMDAADWRT
  188-  207 (43.81/25.51)	PMTNSANAASSGQNAHDPGT
  210-  224 (23.41/10.80)	.....AGAAAGDMDAVDWRT
  296-  314 (31.66/16.75)	PTTNSINAASSGQNALGPG.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     442.15|      70|     106|     117|     186|       2
---------------------------------------------------------------------------
    9-   78 (143.03/107.26)	QLLPDSRQRIVNNITETLKRQLSVTREEGVQELKKIAVGFEEKIYTAATSQPDYLQKISLKILTMETKSH
  117-  186 (148.96/112.02)	QLLPDFRQSIVNKITETLMRHLPVTGEEGVQELKKIALRFEEKIYTAAISQPDYLRKISLKMLTMETDSQ
  225-  294 (150.15/112.97)	QLLPDSRQRIVNKITETLKRHLPVTGEEGVQELKKIALRFEEKIYTAAISQPDYLRKISLKMLTMETKSQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12600 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LKMLTMETKSQHPTTNSINAASSGQNALGPGKGNYSRKHEEKERRLGR
2) METDSQNPMTNSANAASSGQNAHDPGTAPAGAAAG
3) SHNPMTNLSNAASSGQNAHDPGTARAGAAAG
284
181
77
331
215
107










Molecular Recognition Features






MoRF SequenceStartStop




1) ALGPGKGNYSRKHEEKERRLGR
310
331