<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12554

Description LOW QUALITY PROTEIN: U-box domain-containing protein 34-like
SequenceYLVTVIIFGIVVVTHSHYIHLASATNVTTDLEAVKGCHSSTYSEQLDIQDEVERVRLELQTPLPKTCMYNQTCEDLIHTRNKVQLFSSECLEESRKVNAAKKREENLRKIAAEEKERHIEAEKEVETARNXLSEETYERQIAELKALQHSLEKKKTIDALLSSDGRYRRLTREEIEIATDYFSESKMIGEGAYGKVYKGDLDHTPVAIKVLCSGASEKKEEFLREVEVLSQLHHPHIVLLLGACPENGCLVYEYMENGNLEDCILERNSKPFPWFSRFRILFEVACALSFLHNSKPEPIVHRDLKPGNILLDKNFVGKIGDVGLAKIISNVVPESITDYRNSVLAGTLGYMDPEYQKTGTLRPKSDLYAFGKITLQLLAACRPNCLIMMFENAINSNSLADILDKSVPDWPLIEAEELARMALKCCNLKCRDRPDLETEVLPLLKRLSEFADMHTKVEKNLIQAPSPYLCPIIQEVMEDPQIAADGFTYEHRAINLWLTRHIATKQLLQHTMVTPNRTLRQAIQEWRSQVTSFRPRS
Length537
PositionTail
OrganismNicotiana sylvestris (Wood tobacco) (South American tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.07
Grand average of hydropathy-0.336
Instability index49.87
Isoelectric point5.93
Molecular weight61169.53
Publications
PubMed=23773524

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12554
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     133.25|      42|     135|     230|     273|       1
---------------------------------------------------------------------------
  230-  273 (72.99/64.70)	SQLHH.PHIVL.LLGACPENgCLV..YEYMENGN.LEDcILERNSKPFP
  365-  411 (60.26/42.33)	SDLYAfGKITLqLLAACRPN.CLImmFENAINSNsLAD.ILDKSVPDWP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.64|      31|     402|      43|      75|       2
---------------------------------------------------------------------------
   43-   75 (49.72/39.15)	SEQLDIQDEVERvRLeLQTPLPKTC.MYNQTCED
  448-  479 (49.92/30.59)	SEFADMHTKVEK.NL.IQAPSPYLCpIIQEVMED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.57|      13|      21|      92|     104|       3
---------------------------------------------------------------------------
   92-  104 (20.48/15.11)	EESRKVNAAKKRE
  114-  126 (21.09/15.80)	EKERHIEAEKEVE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12554 with Med32 domain of Kingdom Viridiplantae
Unable to open file!