<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12550

Description Mediator of RNA polymerase II transcription subunit 15
SequenceMDVSGQETDWRSAAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQSLTGGPATGAAGIGMPPRGPGQSLGGMGGLGTMGQPMPLSGQPPPGTSGMAPHGMAVVSTATPQTQLQLQQVALQQQQQQQQQQQFQQQQAALQQQQQQQQFQAQQNAMQQQFQAVVQQQQLQQQQQQQQQHLIKLHHQNQQQIQQQQQQLQRMAQLQLQQQQQQQQQQALQAQTPIQQPPMQQPQPPPSQALPQQLQQMHHPQHHQPPPQPQQPPVAQNQPSQLPPQSQTQPLVSQAQTLPGQMLYAQQQLKFVRAPMVVQQPQVQPQVQQVQPQVQQQTAVQTAQAAQMVAPGVQMITEALAQGGMHVRARFPPTTAVSAVPSSSIPLGRQPMAQVGQSSLPMLSSPSPGQQVQTPQSMPPPPQPSPQPGQPSSQPNSNVSSGPAPSPSSFLPSPSPQPSQSPVTARTPQNFSVPSPGPLNTPVNPSSVMSPAGSSQAEEQQYLDKLKQLSKYIEPLRRMINKIDKNEDRKKDLSKMKSLLDILTDPSKRCPLKTLQKCEIALEKLKNDMAVPTPPPPPVPPTKQQYLCQPLLDAVLANIRSPVFNHSLYRTFVPAMTAIHGPPITAPVVCTRKRKLEEDERQSIPSVLQGEVARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLPSVPPLELSVPADYPAQSPLWINRQWQYDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSVHQACLSAA
Length787
PositionTail
OrganismTarsius syrichta (Philippine tarsier)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Haplorrhini> Tarsiiformes> Tarsiidae> Carlito.
Aromaticity0.03
Grand average of hydropathy-0.686
Instability index86.04
Isoelectric point9.52
Molecular weight86580.44
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364148

GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12550
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      98.53|      18|      19|     172|     189|       1
---------------------------------------------------------------------------
  163-  181 (32.81/ 6.41)	QQQQQQ.QqqFQQQQAALQQ
  248-  265 (33.01/ 6.51)	QQQQQQQQ..ALQAQTPIQQ
  290-  306 (32.72/ 6.37)	QHHQPPPQ..PQQPPVA.QN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.00|      17|      19|     204|     222|       3
---------------------------------------------------------------------------
  204-  222 (28.47/11.20)	QQQqlQQQQQQQQQHLIKL
  224-  240 (30.54/ 7.33)	HQN..QQQIQQQQQQLQRM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      94.93|      20|      34|      82|     105|       5
---------------------------------------------------------------------------
   86-  105 (39.62/22.27)	QSLTGGPATGAAGIGMPPRG
  108-  124 (28.88/ 7.16)	QSLGGMGGLGTMGQPMP...
  126-  140 (26.43/ 8.15)	...SGQPPPGTS..GMAPHG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     173.60|      33|      34|     314|     346|       6
---------------------------------------------------------------------------
  319-  353 (51.22/12.87)	PLVS.....QAQTLPGQMLYA..Q..QQLKFVRAPMVvqQPQVQ
  354-  387 (43.05/ 9.65)	PQVQ.....QVQPQVQQQTAV..QtaQAAQMV.APGV..QMITE
  388-  427 (36.42/ 7.04)	ALAQggmhvRARFPPTTAVSAvpS..SSIPLGRQPMA..QVGQS
  464-  490 (42.91/ 9.60)	PNSN.....VSSGP......A..P..SPSSFLPSPSP..QPSQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.86|      13|      34|     150|     162|       7
---------------------------------------------------------------------------
  150-  162 (23.31/ 8.57)	QTQLQLQQVALQQ
  185-  197 (25.56/10.19)	QQQFQAQQNAMQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     151.44|      43|      45|     630|     674|       8
---------------------------------------------------------------------------
  599-  639 (47.19/21.09)	...........AVPTPP.PPPVPPTKQqylcQPLLDAVLANIRSpVFNHSLYR
  640-  683 (69.66/32.06)	TFV....PAMTAIHGPPiTAPVVCTRK....RKLEEDERQSIPS.VLQGEVAR
  687-  718 (34.59/10.71)	KFLvnldPSHCSNNG...TVHLIC........KLDDKDLPSVP..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.62|      29|      35|     532|     562|       9
---------------------------------------------------------------------------
  532-  562 (40.72/37.11)	LDKLKQLSKYIePLRRMiNKID.KNEDRKKDL
  569-  598 (46.90/32.15)	LDILTDPSKRC.PLKTL.QKCEiALEKLKNDM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12550 with Med15 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HNKKSQASVSDPMNALQSLTGGPATGAAGIGMPPRGPGQSLGGMGGLGTMGQPMPLSGQPPPGTSGMAPHGMAVVSTAT
2) QALQAQTPIQQPPMQQPQPPPSQALPQQLQQMHHPQHHQPPPQPQQPPVAQNQPSQLPPQSQTQPLVSQAQTLP
3) QPQVQPQVQQVQPQVQQQTAVQTAQAAQMVAPGVQMITEALAQGGMHVRARFPPTTAVSAVPSSSIPLGRQPMAQVGQSSLPMLSSPSPGQQVQTPQSMPPPPQPSPQPGQPSSQPNSNVSSGPAPSPSSFLPSPSPQPSQSPVTARTPQNFSVPSPGPLNTPVNPSSVMSPAGSSQAEEQQYLDKLKQ
70
255
349
148
328
537










Molecular Recognition Features






MoRF SequenceStartStop




NANANA