<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12511

Description F-box-like/WD repeat-containing protein TBL1X
SequenceMSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAFREKLAQQQASAAAAAAATTATAGTTTTAISQQNTPKNGEATVNGEENGAHAINNHSKPMEIDGDIEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNSGSTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPGTCNPNSNIMLASASFDSTVRLWDVERGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGTLVHSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK
Length523
PositionTail
OrganismAlligator sinensis (Chinese alligator)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Crocodylia> Alligatoridae> Alligatorinae> Alligator.
Aromaticity0.07
Grand average of hydropathy-0.295
Instability index37.19
Isoelectric point5.40
Molecular weight56673.53
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12511
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     381.79|      80|      81|     205|     284|       1
---------------------------------------------------------------------------
  205-  284 (142.88/104.57)	WNLNENSN....SGSTQLVLRHCIREGG...HDVP......SNKD.VTSLDWNSDGTLLATGSYDGFARIW.T.EDGNLASTLGQHKGPIFALKWN
  325-  409 (131.11/95.25)	WQNNTTFA....SCSTDMCIHVC..RLG...CDRPvktfqgHTNE.VNAIKWDPSGMLLASCSDDMTLKIW.SmKQDTCVHDLQAHSKEIYTIKWS
  418-  501 (107.80/76.81)	....PNSNimlaSASFDSTVRLWDVERGvciHTLT......KHQEpVYSVAFSPDGKYLASGSFDKCVHIWnT.QSGTLVHSY.RGTGGIFEVCWN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.57|      40|     119|      30|      74|       2
---------------------------------------------------------------------------
   30-   74 (53.08/54.98)	IESHISQSNINGTL.VPPAAlISILqKGLqyvEAEISINEDGTVFD
  151-  191 (68.49/48.57)	INNHSKPMEIDGDIeIPPNK.ATVL.RGH...ESEVFICAWNPVSD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12511 with Med16 domain of Kingdom Metazoa
Unable to open file!