<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12506

Description transcription elongation factor A protein 3
SequenceMGQAEELARIAKKLDKMVSRKNLEGALDLLKELNSYTMTIQLLQTTRIGVAVNSIRKHCSDEEVAALAKLLIKNWKRLLDSSGTQKKEKDLESQKDKKEKEKRLDFSSWQPEGANSHGLEPCKSPTEKHRKKHKERDLSDRKALDALPGSKKHSLEQKQDRKSSKPGSHPVTPKSHSTDSKHDRESGDSRGSSAASKKSPSDSKKERRDSADSKSSTSTAASSSSTPPKRLSLERRPSTGSSPVAARKNSSDGKEERQNSSKSKPETPKTPTSPSSPTFAPSTCLLASCYLTGDSIRDKCIEMLTAAMKMDDDYKEFGVNCEKMASEIEDHIFQELKSTDMKYRNRVRSRISNLKDPKNPNLRRNVLCGAIAPSLIARMTAEEMASDELKELRNAMTQEAIREHQMAKTGGTVTDLFQCGKCRKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC
Length457
PositionUnknown
OrganismAlligator sinensis (Chinese alligator)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Crocodylia> Alligatoridae> Alligatorinae> Alligator.
Aromaticity0.03
Grand average of hydropathy-1.027
Instability index52.33
Isoelectric point9.42
Molecular weight51019.12
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
translation elongation factor activity	GO:0003746	IEA:UniProtKB-KW
zinc ion binding	GO:0008270	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro
transcription, DNA-templated	GO:0006351	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12506
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     263.19|      69|      72|     115|     186|       1
---------------------------------------------------------------------------
   85-  127 (65.95/27.56)	.QKKEKDLESQK..D......KKEKEKR..LDFSSWQP..................EGaNSHGLEPC..KSPTE
  131-  202 (109.52/54.79)	KKHKERDLSDRKALDALPGSKKHSLEQK..QDRKSSKPGSHPVTPKSHSTDSKHDRESgDSRGSSAAskKSPSD
  203-  272 (87.72/37.10)	SKKERRDSADSKSSTSTAASSSSTPPKRlsLERRPS.TGSSPVAARKNSSDGKEER..qNSSKSKPEtpKTPT.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.09|      17|      17|     301|     317|       3
---------------------------------------------------------------------------
  301-  317 (28.62/19.07)	IEMLTAAMKMDDD.YKEF
  319-  336 (24.47/15.32)	VNCEKMASEIEDHiFQEL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12506 with Med26 domain of Kingdom Metazoa
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