Description | Mediator of RNA polymerase II transcription subunit 1 |
Sequence | MKAQGETEESERLSKMSSLLERLHAKFNQNRPWSETIKLVRQVMEKRVVMSSGGHQHLVSCLETLQKALKVTSLPAMTDRLESIARQNGLGSHLSASGTECYITSDMFYVEVQLDPAGQLCDVKVAHHGENPVSCPELVQQLREKNFDEFSKHLKGLVNLYNLPGDNKLKTKMYLALQSLEQDLSKMAIMYWKATNATPLDKILHGSVGYLTPRSGGHLMNIKYYASPSDLLDDKTASPIILHEKNVPRSLGMNASVTIEGTSAMYKLPIAPLIMGSHPVDNKWTPSFSSVTSANSVDLPACFFLKFPKPIPVSKTFVQKLQNCTGIPLFETPPTYVPLYELITQFELSKDPDPLPLNHNMRFYAALPGQQHCYFLNKDAPLPDGQSLQGTLVSKITFQHPGRVPLILNMIRHQVAYNTLIGSCVKRTVLKEDTPGLLQFEVCPLSESRFSVSFQHPVNDSLVCVVMDVQDSTHVSCKLYKGLSDALICTDDFIAKVVQRCMSIPVTMRAIRRKAETIQADTPALSLIAETVEDMVKKNLPPASSPGYGMATGNNPMSGTTTPTNTFPGGPITTLFNMSMSIRDRHESVGHGEDFSKVSQNPILTSLLQITGNGGSTIGSSPTPPHHTPPPVSSMAGNTKNHPMLMNLLKDNPAQDFSTLYGSSPLERQNSSSGSPRMEMCSGSNKTKKKKSSRVPPDKSKHQTEDDFQRELFSMDVDSQNPMFDVSMTADALDTPHITPAPSQCSTPPTTYPQTVPHPQPSIQRMVRLSSSDSIGPDVTDILSDIAEEASKLPSTNDDCPPIGTPVRDSSSSGHSQSALFDSDVFQTNNNENPYTDPADLIADAAGSPSSDSPTNHFFPDGVDFNPDLLNSQSQSGFGEEYFDESSQSGDNDDFKGFASQALNTLGVPMLGGDNGETKFKSSGQADTVDFSIISVAGKALGPADIMEHHSGSQSPLMATGELGKEKTQKRVKEGNGTGGGSGSGPGLDSKPGKRSRTPSNDGKSKDKPPKRKKADTEGKSPSHSSSNRPFTPPTSTGGSKSPGSSGRSQTPPGVATPPIPKITIQIPKGTVMVGKPSHSQYSSSGSVSSSGSKSHHSHSSSSSSSSSASTSGKMKSSKSEGSSSSKLSGSMYSSQGSSGSSQSKNSSQTGGKPGSSPITKHGLSSGSSSTKMKPQGKPSSLMNPCLSKPNISPSHSRPPGGSDKLASPMKPVPGTPPSSKAKSPISSGSSGPHMSGTSSSSGIKSSSGSGSSGSLSQKTPPASNSCTPSSSSFSSSGSSMSSSQNQHGSSKGKSPSRNKKPSLTAVIDKLKHGVVTSGPGGEDPMDSQMGVSTNSSSHPMSSKHNMSGGEFQSKREKSDKDKSKVSTSGGSVDSSKKTSESKNVGSTGVAKIIISKHDGGSPSIKAKVTLQKPGESSGEGLRPQIASSKNYGSPLISGSTPKHERGSPSHSKSPAYTPQNVDSESESGSSIAEKSYQNSPSSDDGIRPLPEYSTEKHKKHKKEKKKVKDRDRDRDKDRDKKKSHSIKPENWSKSPISSDQTLSMTNNPILSADRPSRLSPDFMMGEEDDDLMDVALIGN |
Length | 1580 |
Position | Middle |
Organism | Mesocricetus auratus (Golden hamster) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Glires> Rodentia> Myomorpha> Muroidea> Cricetidae> Cricetinae> Mesocricetus. |
Aromaticity | 0.04 |
Grand average of hydropathy | -0.681 |
Instability index | 53.29 |
Isoelectric point | 8.90 |
Molecular weight | 168190.00 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364059 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP12482 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 7| 317.41| 42| 42| 1083| 1124| 1 --------------------------------------------------------------------------- 1024- 1098 (46.85/10.71) HSSSNRPFTPPTST.....G..........GSK.....SPGSSgrsqtppgvatppipkitiqipkgtvmvgkpshsqyS...SSGSVSSSGSKSHHS 1099- 1145 (50.45/12.21) HSSSSSSSSSASTS.....GKMK.......SSK.....SEGSS...........................ssklsgsmyS...SQGSSGSSQSK.... 1194- 1247 (39.29/ 7.57) PSHSRPPGGSDKLA.....SPMKpvpgtppSSKakspiSSGSS.....................................gphMSGTSSSSGIKS..S 1248- 1289 (54.50/13.90) SGSGSSGSLSQKTP.....PASN.......SCT.....PSSSS...................................fS...SSGS.SMSSSQNQHG 1290- 1340 (36.41/ 6.37) SSKGKSPSRNKKPSltaviDKLK.hgvvtsGPG.....GEDPM....................................D...SQMGVSTNSSS..HP 1398- 1445 (46.90/10.73) HDGGSPSIKAKVTL.....QKPG.......ESS.....GEGLR..............................pqiassK...NYGSPLISGSTPKHE 1446- 1497 (43.02/ 9.12) RGSPSHSKSPAYTP.....QNVD.......SES.....ESGSS..........................iaeksyqnspS...SDDGIRPLPEYSTEK --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 227.06| 53| 53| 696| 748| 2 --------------------------------------------------------------------------- 593- 658 (46.41/17.38) EDF.S.KV.....SQNPILTslLQITGNGGSTigssptpPHHTPPPvSSMAGN........tknH.PmlmNLLKDNPAQDFS. 659- 710 (51.96/20.57) TLYgSSPL....ERQNSS.S..GS...................PRM.EMCSGSnktkkkkssrvP.P...DKSKHQTEDDFQR 711- 765 (72.06/32.12) ELF.SMDV....DSQNPMFD..VSMTADALDT.......PHITPAP.SQCSTP...pttypqtvPhP...QPS.......IQR 819- 880 (56.63/23.25) ALF.DSDVfqtnNNENPYTD.pADLIADAAGS.......PS.SDSP.TNHFFP......dgvdfN.P...DLLNSQSQSGFGE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 193.62| 49| 53| 354| 406| 3 --------------------------------------------------------------------------- 311- 353 (53.89/27.67) .IP..VS...KT..FVQKL...QNCT.......GIP..LF.ETPPTYVPLYELITqFelsKDPD 354- 402 (92.93/48.37) PLP..LN...HNMRFYAALPGQQHCY...FLNKDAP..LP.DGQSLQGTLVSKIT.F...QHPG 405- 457 (46.80/25.64) P..liLNmirHQVA.YNTLIGS..CVkrtVLKEDTPglLQfEVCPLSESRFS.VS.F...QHP. --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 130.78| 30| 156| 991| 1023| 4 --------------------------------------------------------------------------- 952- 976 (34.83/10.80) GSQSPLMATGELGKEKTQK.....RVK...EGN... 993- 1023 (50.82/32.18) GKRSRTPSNDGKSKDKPPK.....RKKADTEGKsPS 1047- 1078 (45.12/18.13) G.RSQTP..PGVATPPIPKitiqiPKGTVMVGK.PS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 61.46| 18| 20| 1343| 1360| 6 --------------------------------------------------------------------------- 1343- 1360 (32.34/15.35) SKHNMSGGEFQSKREKSD 1364- 1381 (29.12/13.05) SKVSTSGGSVDSSKKTSE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 63.63| 17| 22| 541| 558| 7 --------------------------------------------------------------------------- 541- 558 (29.75/19.81) PPASSPGYGMATGNNpMS 563- 579 (33.88/17.57) PTNTFPGGPITTLFN.MS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 129.85| 44| 65| 153| 197| 8 --------------------------------------------------------------------------- 165- 213 (67.87/47.59) GDNKLKTKMYLALQSLEQDLSKMAIMYWKATNA....tpldkILHGSVG.YLTP 216- 269 (61.98/48.07) GGHLMNIKYYASPSDLLDDKTASPIILHEKNVPrslgmnasvTIEGTSAmYKLP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 68.66| 19| 22| 1147| 1165| 9 --------------------------------------------------------------------------- 1147- 1165 (37.50/15.74) SSQTGGKPGSSP..ITKHGLS 1168- 1188 (31.15/11.69) SSSTKMKPQGKPssLMNPCLS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 62.24| 19| 405| 48| 69| 10 --------------------------------------------------------------------------- 48- 69 (26.62/22.42) VVMSSGGHQHlVSCleTLQKAL 465- 483 (35.62/18.92) VVMDVQDSTH.VSC..KLYKGL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 33.71| 10| 54| 1472| 1481| 14 --------------------------------------------------------------------------- 1472- 1481 (16.78/ 7.02) IAEKSYQNSP 1527- 1536 (16.94/ 7.17) IKPENWSKSP --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) FGEEYFD 2) IKAKVTLQ 3) IPKITIQIPK 4) IRPLPEYSTEKHKKHKKEKKKVK 5) KPSLTAVIDKLKHGV 6) LRPQIA 7) RLSPDFMMGEEDDDLMDVALI 8) VAKIIISKH | 878 1405 1060 1487 1301 1422 1558 1390 | 884 1412 1069 1509 1315 1427 1578 1398 |
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