<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12447
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MPMIMDDGINVDDLFGESASLELGLPATAPTSNSTKGLAQRLDEMRLLGCCQKIAWSKQGCIAYISQDTLRVNLRHLECRPSDGKWVLSDDTPLHPVAEAHGGQPLVHLCWNEIGSELAVVDSSGRVSIYNIAISLNSLAGQRQAAFDPVDDATQIVGMMWLNIQRSVSAHFGVSPMFGPFHPAGKAALLCVTRSGIIRLLYQNPDNKWAEISAELKNASYSDRLLTHAAIVATQNGILIATYSACQKIYFYRVQINWTPPQWDPSQLKQAPNQFPVPSFRFMHSKVEAPCIIPSASRNGEATNDGMPSSTNPLYCLTRLDIVLAAHDNSAGMTTNPWIIAVFSIPPHATPDHSQQQSPCSVIVRWQLESAPQVLHPKFDEVNAKKNNAQIKPKSVLRRQEDMYCDRYVTMIEQTEHGNVLAVTYDDSSVTFYDPKTMAVLNGTDDTNTLTSLAHAGFQYPPDSAGSFPSRYRGGTKFDTSIAGLHISFSPSGCNAVTLDGEGQAQLRVMEHSYGAENGLYDENKFSAAVASLTLAFCRGCGSEFNTDDILLILKRQASPDAQISFINEVYRALGVNCNYTQENDKLMSHQYLPKCLSVQAALGFIDKYKSRNFASNVPWTILQLRHASVLYALFLQYLKGGVQAEPPDADAIRILLGNTKWALDLLHYVLNDLLDLADDLESLLSDQEAFAQKLKTISSLPLIILLSSMSRAFLRFICRGLRGIQAGYATAPLTGDAGVYYAEIYRTLDTSPVRIDVYEKLLAGVDSTVRHVYHGAGFGDNERPGPEKELLVNGRIPPVLVTAVSTILRQTVPALKPDIDRMAIYMGDYSWLGLGSDRRAELYRRTRDVDIIKKIPFRSTASAGSDETQSGKHNPSQVRRRCVRCCEIMCGAYPPRPQLSSRMMYKLGYVRYCICGGGWTLESDFHR |
Length | 928 |
Position | Tail |
Organism | Aspergillus oryzae (Yellow koji mold) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes>
Eurotiomycetidae> Eurotiales> Aspergillaceae> Aspergillus>
Aspergillus subgen. Circumdati.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.187 |
Instability index | 39.73 |
Isoelectric point | 6.46 |
Molecular weight | 102577.68 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP12447
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 346.66| 92| 97| 286| 380| 1
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234- 325 (111.42/60.58) ........TQNGILIATYS........ACQKIYFYRVQINWtppqwdpsQLKQA...PnQFPV..PSFRfmhsKVEAPCIIP.SASRNGEATNDGMPSSTNPLYCLTRLDIVLA
326- 422 (143.35/87.25) AHDNSAGMTTNPWIIAVFSippHATPDHSQQQSPCSVIVRW........QLESA...P.QVLH..PKFDevnaKKNNAQIKPkSVLRRQE...DMYCDRYVTMIEQTEHGNVLA
424- 501 (91.88/48.74) TYDDSSVTFYDPKTMAVL....NGTDDTNTLTSLAHAGFQY........PPDSAgsfP.SRYRggTKFD...tSIAGLHISF.SPSGCNAVTLDG...................
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 412.58| 134| 173| 517| 666| 2
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517- 666 (206.31/178.33) ENGLYDENKFS...AAVASLTL.........AF....CRGcgsefntddILLILKRQAS.P...DAQIsFINEVYRALGVNCNYTQENDKLMShQYLPKCLSVQAALGFIDKYKSrnfaSNVPWTILQLRHASVLYALFLQYLKGGVQAEPPDADAIRILLGNTKWaLDL
682- 835 (206.27/137.23) ESLLSDQEAFAqklKTISSLPLiillssmsrAFlrfiCRG.........LRGIQAGYATaPltgDAGV.YYAEIYRTLDTSPVRIDVYEKLLA.GVDSTVRHVYHGAGFGDNERP....GPEKELLVNGRIPPVLVTAVSTILRQTVPALKPDIDRMAIYMGDYSW.LGL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 129.40| 36| 833| 50| 91| 3
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50- 91 (61.95/44.07) CCQKIawskqgCIAYISQDTLRV....NLRHLECRPSDGKWVLSDD
886- 925 (67.45/35.66) CCEIM......CGAYPPRPQLSSrmmyKLGYVRYCICGGGWTLESD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 57.48| 16| 96| 111| 126| 4
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111- 126 (28.80/24.03) WNEIGSELAVVDSSGR
209- 224 (28.67/23.88) WAEISAELKNASYSDR
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