<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12435

Description Uncharacterized protein
SequenceMNALSTTTSTKHASVSNTTATTAHETLVARVDSQIDSLLSGMRLVIAAAGGSSTTTTANAAANATPSSSSVTDQHTFLAAQESLVAEAATANMARSVEQLLGLTTELKQTLILNDFAALNQQILSRHRTLTNQTALCQTNLAEMRSDLIKVHQQLVDSLYGSV
Length163
PositionHead
OrganismBatrachochytrium salamandrivorans
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Chytridiomycota> Chytridiomycota incertae sedis> Chytridiomycetes> Rhizophydiales> Rhizophydiales incertae sedis> Batrachochytrium.
Aromaticity0.02
Grand average of hydropathy-0.002
Instability index30.93
Isoelectric point5.89
Molecular weight17114.95
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12435
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      95.34|      26|      26|      85|     110|       1
---------------------------------------------------------------------------
   60-   83 (22.08/10.65)	......AAANATPSSSSVTDQHTFLaaQES
   85-  110 (38.19/23.97)	VAE..AATANMARSVEQLLGLTTEL..KQT
  112-  139 (35.07/21.39)	ILNdfAALNQQILSRHRTLTNQTAL..CQT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.45|      11|      33|      13|      23|       3
---------------------------------------------------------------------------
   13-   23 (17.91/ 8.09)	ASVSNTTATTA
   48-   58 (18.54/ 8.60)	AAGGSSTTTTA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12435 with Med22 domain of Kingdom Fungi
Unable to open file!