<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12429

Description Uncharacterized protein
SequenceMSDPFVTILRAANISAISALLWTDAQATQPASDMDLTTHVSFAAPVPVSSLAGTSTDTRSFSTTDAAGYKDYDIWTVLFFWKKKDLDHPSYLRLLGKSSGGRDVAPVSFIDRKDLLDYLGGIADVSANIRSTGSSKPRPDVSTEAIVDLLSHEAFMSEFQRKRMLVSDKVKQDLEHIKRLRKVERPVNTTASVLSVTGPKSFVIIQKLAADKFTRETEESRSSLAPPTSALPTSVPPTRASSTRAPSTSVPSKHVRSTKTDAPVKKSSQRSSQKSSRHTSKQATEAMPIILVPAAAQSVLTLYNIKEFLIDQKFTPTETYRNRGENKPTQVILERDPFKISPDVQQKFLVLDSVETMKHRDWDRVVAVFAMGQVWQFRGWKWEKPVEIFHNILGFTLKFVDEPPPGLVPQWKVEVLNIHRSKRYLDGTVSMLLETPAKTLNNIPSATAGSEGRFYSNDFSNDFSNDVFSKGNTAAAAAATERRIIDILGSNGIGSKVQVNAIIHLPNRDDSDSGCIDNAAAGSSSDSKANKEVTSKTEQVDKDQDAVDPSSDSPTNSTTNSPTNSTTNSPTNSPTRSSIRVRASDGGLNAAGSSMTTNVPVRISSKVAMTDGLVAQVAARAATRVRAATRARTSSTVATVATVTTVATVTTEGEGVTTTLDTEASNTKVITAMGEVDKESTTTPVIGTVVPIIEPTTPVVGTTTPVVGTTTPIIEPTTVLVEEPSLLVNAATITAAATTTTTTTTTTAKQCDPALDLTSNPYNHHQNSGPGRNSSDSCSSHSNPVCPSSLDKEAAADMLQVHRSSVTIAAGSNNTTRNTINTNTTTDTISTGPSSPTASIGSVRTNPLQQPSLAKRMSSKMLSLLFHRRSDSDSLTNITEDEEGIDPSAVCGGVLSNGGRHMHHGFKDCNGRGIDHYGGGGGGADDSSTCDSSTCGSTCNSTCDSSTCDGRRSPPSMATSRASLDSARSASSSGNIPFGKRLLGSFKIIRPARFSLEERRSAPSSPSSPSYPSYSSYSSYSSYSSSPSSFLTPPAAELMTQPSSPPAVPTAAVSPSRTTTPSTTPSTDMSTDMSTDMSTLEPDSQTPSTLILKNTDVAPSSIPLNTRNSSMIISKSIASTSASVVSTPAAIAIDPTAAPTSSINPDVSSVSTIADASFTPSSLLLLLLSRPPVSSDVRADLTHAPFISTSSKAVVDPTSLESQCVSAQIPSSHLADSHVPTAASMLVVAPTCQPSPSTYDAASSTPLFLPVSSSMTITAPIPIPSHVDVPMIVSTTAITQTQSDFPLTPVSSIIPTFGYSPGLENIPTSHVYPSFPNDQHTPPQPIHIRGSRDDFHLSPYHSTALSCSSLPVSIPGAASSPPDIITSMSLPRSPKGSLANPLRRLSTSPRSAKSMSPPGLPTDWGNAISAVASEEELSDFKKWVLTREEPDVGALSTAANAVALQKRKSFKRTASFIARHVNITPVPLVPSESPLSLEIGNALQAPSPEQDESLSLSIPDISEEFSLGDNIQPELAAQSTVASSGATQTSSAPKRSHAIRSRMLRRDVRKAEPLTTDPSSNEAHATLNEEESDVGVKISNNVHTGLFISTEGHASNLDPSPTEVKAPPFLDLACADPDTLPSTTELPVPASPPFAPPVSRQLSYKGVTFNPAIAVGPRRSSILYGAKPVQLIKPDDAPPVVDRCSSTESLSSSSSSSSSSSTSSSTSSSTSPSPLETMCLDYDDSRRPLSASKSLDLSELSRRPSSEFNRSSTLSSLFSESSLQSYLRPRHSADKTFTPSQRQHYTSSDTVGLGDRAASKNSDRDSSTTPWGWIKGVLRSKKSKQSIKETSEDSTSALDHDWNPYPQDHPSRHSVNGDSAPLSPYAEGYPNGLHLGAYFGSRLSSDDERNVYRLSHIKLAQLGRPLEHQVAISNLMMYILSVHADVTLQRRGPRVRGLRKGGGKRRARQQQQQQQQQQQQQQQQQQQQQSQVQEAIHSNGVAVGNGSVPSSAAAMTAPHLLVDLHPVAISAAGPAKMASASFSAPPSYGSSASTPMTDSTHATTLADKRVDADAIHASSPEHCLAATLDLRASQDTANAQSPGLGTVRHSQPKRIGSIDSDMSETGSISESDSEDEMEAEVGSSSDQGGTFFYPDSSIDGSVVPIITTIAPPSAIITSPIVPADEFVHRASPMRSVGRIGRSHLVPYGVATHPVNQKLRDEDEDNVPLGMLQNRRL
Length2216
PositionTail
OrganismBatrachochytrium salamandrivorans
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Chytridiomycota> Chytridiomycota incertae sedis> Chytridiomycetes> Rhizophydiales> Rhizophydiales incertae sedis> Batrachochytrium.
Aromaticity0.04
Grand average of hydropathy-0.404
Instability index63.66
Isoelectric point6.25
Molecular weight235243.70
Publications









Function






Annotated function


GO - Cellular Component
Cdc73/Paf1 complex	GO:0016593	IEA:InterPro

GO - Biological Function
GO - Biological Process
histone modification	GO:0016570	IEA:InterPro
transcription elongation from RNA polymerase II promoter	GO:0006368	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12429
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      84.44|      17|      18|     681|     697|       2
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  636-  651 (19.28/ 6.53)	.TVATVATVTTVATVTT
  681-  697 (32.14/15.85)	TTTPVIGTVVPIIEPTT
  702-  718 (33.01/16.49)	TTTPVVGTTTPIIEPTT
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     101.36|      23|      23|     554|     576|       5
---------------------------------------------------------------------------
  554-  576 (40.04/21.16)	PTNSTTNSPTNSTTNS.PTNSPTR
  579-  602 (30.03/13.39)	IRVRASDGGLNAAGSSmTTNVPVR
  933-  952 (31.28/14.36)	...STCGSTCNSTCDS.STCDGRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.20|      16|      19|    1365|    1381|       8
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 1365- 1381 (24.46/13.48)	ITSMSL.PRSPKgSLANP
 1382- 1398 (24.74/ 8.92)	LRRLSTsPRSAK.SMSPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      93.15|      22|      23|    2038|    2060|       9
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  784-  805 (23.94/ 8.73)	PVC.PSSL.DKEAAADmlQVHRSS.
 2038- 2060 (32.38/18.30)	DSTHATTLaDKRVDAD..AIHASSP
 2061- 2082 (36.83/17.33)	EHCLAATL.DLRASQD..TANAQSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     111.70|      24|      27|    1210|    1236|      10
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  227-  250 (37.20/10.33)	PTSALPTSVPPTRASSTRAPSTSV
 1210- 1233 (42.69/13.66)	PSSHLADSHVPTAASMLVVAPTCQ
 1243- 1263 (31.81/10.94)	SSTPL...FLPVSSSMTITAPIPI
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.93|      11|      25|     517|     527|      12
---------------------------------------------------------------------------
  517-  527 (19.33/ 9.82)	DNAAAGSSSDS
  543-  553 (20.61/11.14)	DQDAVDPSSDS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     447.63|     107|     386|    1080|    1209|      13
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 1019- 1145 (79.10/31.51)	SYSS...YS.SS.......................PSSFLTPP.....AAELMTqP....SSPP...........................................avptaavspsrtttpsttpstdmstdmstdmstLEPDSQTPSTLilkNTDVAPSS....IPLNTRNSSMIISKSIAStsasvvstpaaiaidptaapTSSINP
 1146- 1209 (75.59/25.05)	DVSS...VS.TI.......................ADASFTPS.....SLLLLL.L....SRPPVSSD......VRADLTHAPFISTSSKAVVDPTSLESQCVSAQI.......................................................................................................
 1471- 1580 (110.89/41.15)	SESP...LSlEI.......................GNALQAPSpeqdeSLSL........SIPDISEEfslgdnIQPELAAQSTVASSGATQTSSAPKRSHAIRSRM.................................LRRDVRKAEPL...TTD..PSSneahATLNEEESDVGV............................KISN
 1581- 1697 (96.16/34.66)	NVHTglfIS.TEghasnldpsptevkappfldlacADPDTLPS.....TTELPV.P....ASPPFAPP......VSRQLSYKG.VTFNPAIAVGPR..RSSILYGAK.............................pvqlIKPDDAPPV......VDRCSST....ESLSSSSSSS..................................
 1698- 1769 (85.90/30.13)	SSSS...TS.SS.......................TSSSTSPS.....PLETMC.LdyddSRRPLSA.....................SKS.LDLSEL..............................................................SR....RPSSEFNRSSTLSSLFSE.................sslQSYLRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.74|      16|      17|     354|     369|      14
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  354-  369 (28.87/21.55)	VETMKHRDWDRVVAVF
  374-  389 (32.87/25.69)	VWQFRGWKWEKPVEIF
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.39|      17|      18|    1834|    1850|      16
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 1834- 1850 (34.44/15.55)	STSALDHDWNPYPQDHP
 1854- 1870 (30.95/13.27)	SVNGDSAPLSPYAEGYP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.18|      22|      27|     446|     470|      17
---------------------------------------------------------------------------
  446-  467 (38.83/30.81)	ATAGSEGRFYSNDFSNDFSNDV
  476-  497 (35.34/18.21)	AAAATERRIIDILGSNGIGSKV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      55.13|      10|      27|     884|     893|      18
---------------------------------------------------------------------------
  884-  893 (20.52/12.32)	GIDPSAVCGG
  905-  911 (14.87/ 6.37)	GFKD...CNG
  913-  922 (19.73/11.48)	GIDHYGGGGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.47|      10|      18|     807|     816|      19
---------------------------------------------------------------------------
  807-  816 (17.01/ 7.61)	TIAAGSNNTT
  828-  837 (18.46/ 9.06)	TISTGPSSPT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.19|      20|     830|     955|     987|      21
---------------------------------------------------------------------------
  957-  978 (29.96/34.38)	MATsrASLDSARSASSSGNIPF
 2017- 2036 (37.23/ 8.72)	MAS..ASFSAPPSYGSSASTPM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.92|      16|      27|      73|      88|      22
---------------------------------------------------------------------------
   73-   88 (31.75/25.25)	DIWTVLFFWKKKDLDH
  103-  118 (28.18/21.44)	DVAPVSFIDRKDLLDY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.31|      26|     830|    1333|    1361|      24
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 1333- 1361 (45.01/31.83)	DDF.H.LSPYHSTA.LSCSSLpvsIP.GAASSP
 2164- 2193 (33.30/15.48)	DEFvHrASPMRSVGrIGRSHL...VPyGVATHP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.49|      18|      27|    1403|    1422|      25
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 1403- 1422 (23.94/20.57)	DWGnAIS....AVASEEELSdFKK
 1431- 1452 (25.54/12.31)	DVG.ALStaanAVALQKRKS.FKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.72|      11|      24|     252|     262|      28
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  252-  262 (18.34/11.71)	SKHVRSTKTDA
  276-  286 (18.38/11.75)	SRHTSKQATEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.41|      16|      24|    2098|    2113|      29
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 2098- 2113 (26.35/15.34)	IDSDMSETGSISESDS
 2121- 2136 (29.06/17.92)	VGSSSDQGGTFFYPDS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12429 with Med15 domain of Kingdom Fungi
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