<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12428

Description Uncharacterized protein
SequenceMDCLQQQQQQQQQQQQQQQQQQQQQHLIDLDSNSLSTVALFSETTVLTVAPTNSISNSSIIDDNILNNSNDRAVNKTSSLINMSTDPADSGNPSTDLLHLPPQSNPHYSNDSLSDNGVDDPSVDDSSAAVLPVVTIIFNNIAYPLFTTTGSTLGGDGAAISSTRVSPTAEMIPTTFALISDDYTPVSFDLDDYDLPSLVLLESPLYYLIKEIKHSLGLTTPLCDVSLNVPQLRLYAIHQDLPIVTRLTLQRLCEFHEAHHLHSTDGSPKTDLPPLIINIVQHQTSLTSQLAFLAQICSEGGLDSNPIILDSEDEIESTYESSSLPLHSFQTDDTQISTQDGDGIDDLVIVNGIEPSNRSDTVLAFDHQTGLADPDTFPSDPDVVEVDGEYGVDENFVDAGEDQDDYESQAFDNADEAEDLINDFVVNHADDENADDVVDIADDDMDGGAILGNDRTIVFGEGEYDTAADGGYDTIVDGDNNDTNGDDTPDPTFTGDTVSSGEVPEINVFDLATDTVFDNDNEVDSEMAPTDLSQDDTNAVGIDDDDVNAGGSSLGDFADDPFAVYTDSLVVEDVSGTTELLLTNVAETDGTDQGDSNADPITVDLDSGHTLVGNSDTADAIVADSSFLSDLGNTVHNLESVPESDAVNIDQAEWESNGDGLNDSALPAVDLPLEIAMMDDEATLDADLGDPLLSENGEVGDLANNVDYDNADDDADDDDDNAVGIAVIEEFIPEDAPIDTNDVAALGTSSEVCKDRETLPDHSGASDSVGVAEFIHSNAVDTLPTLCNGALDVECDAGDSIDTTTSGKRELEQDHDDASAKRARV
Length825
PositionTail
OrganismBatrachochytrium salamandrivorans
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Chytridiomycota> Chytridiomycota incertae sedis> Chytridiomycetes> Rhizophydiales> Rhizophydiales incertae sedis> Batrachochytrium.
Aromaticity0.04
Grand average of hydropathy-0.417
Instability index37.34
Isoelectric point4.05
Molecular weight87973.70
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12428
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      69.29|      15|      16|     454|     469|       1
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  454-  469 (23.56/13.72)	DrTIVFGEGEY....DTAAD
  473-  486 (26.10/11.13)	D.TIVDGDNN.....DTNGD
  496-  514 (19.63/ 6.65)	D.TVSSGEVPEinvfDLATD
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     208.74|      42|     102|     411|     452|       2
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  411-  441 (43.31/17.02)	..........................FDNADEAEDLIN.D.FVVNHA....D.DENA........DDVVDIA
  517-  543 (30.89/ 9.63)	..........................FDNDNEVDSEMA.P.TDLSQ.....D.DTNA..........V.GID
  544-  578 (25.93/ 6.68)	D.........DDVNaGGSSLG...................dF....A....D.DPFAvytdslvvEDVSGTT
  579-  623 (26.88/ 7.24)	EllltnvaetD.........G.....TDQGDSNADPITvD.LDSGHTlvgnS.D.TA........DAIV..A
  624-  665 (37.52/13.57)	D.........SSFL.SD..LGntvhnLESVPES.DAVN.....IDQA....EwESNG........DGLNDSA
  679-  718 (44.21/17.56)	D.........DEAT.LDADLG..dplLSENGEVGDLAN.N.VDYDNA....D.DDAD........DD.....
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.98|      15|      16|     781|     796|       3
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  781-  795 (28.03/10.51)	DTLPTLCNGALDVEC
  799-  813 (22.95/ 8.11)	DSIDTTTSGKRELEQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     218.54|      72|     102|      84|     173|       6
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   84-  128 (56.66/23.22)	........................................................................................STDPADSGNPSTDL.LHLPP....QSNPHYSndSLSDNGVDDPSVDDSSA
  129-  228 (86.82/59.60)	AVLPVVTII.......FNNiAYPLFTTTGstlggdgaaisstrvSPTAEMIP.......................ttfalisddytpvSFDLDDYDLPSLVL.LESPLyyliKEIKH....SL...GLTTPLCDVSLN
  239-  346 (75.06/31.52)	QDLPIVTRLtlqrlceFHE.AHHLHSTDG...............SPKTDLPPliinivqhqtsltsqlaflaqicseggldsnpiildSEDEIESTYESSSLpLHSFQ....TDDTQIS..TQDGDGIDD........
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12428 with Med15 domain of Kingdom Fungi
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