<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12425

Description Uncharacterized protein
SequenceMNNFNQALAASLLQQQQQQQQQQQQQQQQQQQLLMGSLWRTAFSEEQRAEVVNKLTDLVRQGIPQNSQQEDRIRALATSFESGIYDRADSRDNYLALLQNKMMAIRKRLTVSREEHATSSTTTPSPQITAQSLPQQPPQQQKPAVTQLGGPIDMAQAFSNPTLMAQLLAQQPQLQQQLSATMLQQEQLRQQQQLNSSQISGLTPTQSNQLLQRKLASQTNATAAATTNRQIRNAINFMQQHQQPHQTPAQTQAQAQTQAQTQNQNQQAQHLMGNPVLNLQQQLQLQQSGANLALSAAPVPSSTAGLAARSLTSSSVTSTPTIHPPGSLRLNPLSLNDIQKQYVNKRLQIMAPIYQNIDHYVSIMQQHGNGEKEMEKITKLLTMKQMLSDQFEALPRGIYYLAPIACDTTITHLEKYKLYCEVLEKGGKGQATTGNVLGQLLFSSESSQSGTAGTTTPSQPPVTHAEEVQTPGKSNVTMAQTTDSNDTAMTAAVSAAVALAATGSKKQQSTAASTTVLATTTGSRTPSISSAAGGISMSASKSARSSSAGGIASPKDSADAMKAPDTQAQHMIEREFGLPGHMDRTAHGIGEALGMYTNDVSMEEECDFDIAEMSDVDVDDAEFLFGGGYSTTVPLNRLAAFPVDESKTDPSLAKHYADQGHSGISSAGANTGGSTLHGESSGRLSLSDQLGHISSTMTHVLVERFYLLPPDGPISICFSWKEGRIGVRVESEAAFDACNSSATNSLFEIEMVHGIDSDQLHAALQTRALALKRPINFSDLLELAMGFIKA
Length790
PositionTail
OrganismBatrachochytrium salamandrivorans
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Chytridiomycota> Chytridiomycota incertae sedis> Chytridiomycetes> Rhizophydiales> Rhizophydiales incertae sedis> Batrachochytrium.
Aromaticity0.04
Grand average of hydropathy-0.477
Instability index53.80
Isoelectric point5.90
Molecular weight85325.35
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12425
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     540.63|     142|     144|      25|     167|       2
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    6-  107 (151.29/50.05)	.....................QA.LAASLLQQQQQQQ....................................QQqqQQQQQQQQLLMGSLWRTAFSEEQRAEVVNKLTDLVRQGIP.QNSQQEDRIRALATSF...ESGIYDRADSRDNYLALLQNKMMAIRK
  108-  214 (169.66/59.79)	RLTVSRE..EHATSSTTTpSPQI.TAQSLPQQPPQQQKPAVTQLG.GPIDMAQAF.SNPTLM..........AQLlaQQPQLQQQLSATMLQQEQL................RQQQQ.LNSSQ...I...........SGL...TPTQSN..QLLQ......RK
  215-  345 (184.46/62.56)	..LASQT..N.ATAAATT.NRQIrNAINFMQQ...HQQPHQT.....P...AQTQ.AQAQTQ..........AQT..QNQNQQAQHLMGN...PVLNLQQQLQLQQSGANLALSAAPvPSSTAGLAARSLTSSSvtsTPTIHPPGSLRLNPLSLNDIQKQYVNK
  439-  508 (35.22/ 6.93)	QLLFSSEssQSGTAGTTT...........PSQPPVTHAEEVQTPGkSNVTMAQTTdSNDTAMtaavsaavalAAT..GSKKQQ.................................................................................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.93|      24|      30|     593|     622|       3
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  593-  617 (39.01/42.99)	L..GMYTNDVSMEEECDFDIAEmSDVD
  624-  649 (36.92/21.26)	LfgGGYSTTVPLNRLAAFPVDE.SKTD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12425 with Med15 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KRLTVSREEHATSSTTTPSPQITAQSLPQQPPQQQKPAVTQLGGPIDMAQA
2) LSATMLQQEQLRQQQQLNSSQISGLTPTQSNQLLQRKLASQTNATAAATTNRQIRNAINFMQQHQQPHQTPAQTQAQAQTQAQTQNQNQQAQHLMGNPVLNLQ
3) QSTAASTTVLATTTGSRTPSISSAAGGISMSASKSARSSSAGGIASPKDSADAMKAPDTQAQHMIEREFGLPGHMDR
4) SQSGTAGTTTPSQPPVTHAEEVQTPGKSNVTMAQTTDSNDT
107
178
508
447
157
280
584
487










Molecular Recognition Features






MoRF SequenceStartStop




NANANA