<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12424

Description Uncharacterized protein (Fragment)
SequenceMSGSHGQDHRNHGRNPALSHNRSHKPNTTNTTNTTNATAAATAANTNNNSSSLTSPTIPPYPNALLEFQQFNDRTDLHQQIRSTMVSDPDVAAIAAAAAAARNSYEMTGSLNLTHMRQMPPFQPAVPQSRMQSVHHSVPHHNVAGATTTTTTTTTTATTATTATAQPSHNTHAPQMNLPLKPQIFQPQLLHHIQQQQFQQQQQQQLQLKQQRLAQQQQLQLQRQQQQQLHLQKQLQQRVSPPQHPAAALDALASGLKPLQKFENRPPVDKLLLRSGGPDYADIYLQRPDQLEDKFDENTVKMGYTDKPPVQSEILSAFESIRILDHLSRKGVLLNMTTFASTILTAQSETQFPKESQFVIPKRTSTAPKARDNWIDDLVSGVSLSEMSKSIPFGLKLDRMLEILHQKQVPLMRATWAIKMIGVIDLAASSRASQVESHLDTSFSYTAIVIAFIQKQISEVALPAIATPQLSLVRSQKRTPSKEAVAAAAEAAAIKRISPEQRRDFISRWNYLVRLCVQQYEEGLLDQASFLKKSLEILKNSNFSQTMFAITLVSVFLEKMARSRALMRLLLSICLKKLKRLKPHLESSGSAQEQHTQLVSLLQRGYTYAPDSFVSAGLWGQLEEFTAVIFAGENQTRAEIKSRNSWLLNPGSLLPTKLENMEMTLRSIDRYTNYSQLYESWDGFFDGFSDPSVSLRYLCEWTFRDPLSSQDHRVFVASRLVADCHDSILEGSLDVGSQNQVHTDFARFLFDVLDKYILHQPHGCEGQFRLYMFFSQLEQLQVFSIQKYIQRLVARGDLEESSSLFPKYESFLHGYPLHCADAGHGRTLADNVNGDPSSSSSDGGHIRDVLEYITRIDTERRVRDALLYQTVKGQIVSRLPRMFAHGDCVDTTRDPPVRDYTPDPILAMPDLLLTSNLVLLPPLWRTRLSLWLKQSVVHFIVKAQEIGINNWKTVSTPGNSIMTDHQLAFIIFVFESTCD
Length979
PositionKinase
OrganismBatrachochytrium salamandrivorans
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Chytridiomycota> Chytridiomycota incertae sedis> Chytridiomycetes> Rhizophydiales> Rhizophydiales incertae sedis> Batrachochytrium.
Aromaticity0.07
Grand average of hydropathy-0.385
Instability index48.34
Isoelectric point8.54
Molecular weight110160.68
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12424
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     119.71|      28|      60|      37|      64|       1
---------------------------------------------------------------------------
   37-   64 (48.64/29.08)	ATAAATAA...NTNNNSSSLTSP...TIPPYPNA
   95-  125 (42.87/24.73)	AAAAAAAR...NSYEMTGSLNLThmrQMPPFQPA
  157-  182 (28.20/13.68)	ATTATTATaqpSHNTHAPQMNLP...LKP.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     150.89|      27|     188|      68|      94|       2
---------------------------------------------------------------------------
   68-   94 (44.39/23.21)	FQQFNDRTDLHQ.QIRSTMVSDPD..VAAI
  196-  221 (35.51/17.02)	.QQFQQQQQQQL.QLKQQRLAQQQ..QLQL
  223-  249 (37.48/18.39)	RQQ.QQQLHLQK.QLQQR.VSPPQhpAAAL
  259-  283 (33.51/15.62)	LQKFENRPPVDKlLLRS...GGPD..YADI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.44|      22|     125|      12|      35|       3
---------------------------------------------------------------------------
   12-   35 (38.32/32.27)	HGRNPalSHNRSHKPNTTNTTNTT
  135-  156 (41.11/27.89)	HHSVP..HHNVAGATTTTTTTTTT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     183.11|      60|     206|     497|     617|       4
---------------------------------------------------------------------------
  368-  432 (89.56/43.68)	PKARDNWIDDLVSGVSLSemSKSIPFGLkLD......RMLEILhqKQVPLMRATWAIKMIGV.IDLAASSRA
  499-  565 (93.55/161.38)	PEQRRDFISRWNYLVRLC..VQQYEEGL.LDqasflkKSLEIL..KNSNFSQTMFAITLVSVfLEKMARSRA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12424 with Med12 domain of Kingdom Fungi
Unable to open file!