<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12419

Description Uncharacterized protein
SequenceMSPAPASATTPSASLKGGSLSSLSAFSPRIPPHTSQTSSLDNHPIMATSSSDSPIKLEAGAQIQSATDTTGGDEKASLQSPPTSQPSKSSNQQQQQQQQQQQQQSLTLSSVVNEAISNRGSTLQLDESGCYTNGFGGKYTPFQLSDQEKEIVIETMQHITPMYLKIDSIVNDLANYGGENELDKIKRLSIMKQMLSAQFEVLDRGVFFVRVEVLSHIYQNMLRFMQYTEALKLRHMSQQQQQMLMSQQNASQEMMMQQQQQQQSRKSDLQSSSEDILSPSASTKRTPTATTNGASAGSGAVLSMATSHSTPGATTSASSNSMARSNPVSTLGMPTVPMSPHISPASVLNSPNAHGGTTVSAGGPSLQSPQTSPNIMMPQSGQAVRPNGGISASNENSTNTTLQSTSTGATTPISIAPATPTSIAGGVSAAGGHSPTTQQVQSVQLQQLYYTLNSQLVQCEEILGSQHQRGLAAEQVAIVQNKKQILHTQLSQIVAQLTAIQTQQQDLLRSGARPLGTGARPLSGPANGGSTGVLPQGGQSLLRSGSGNALTLQQQQQQQQQQIQLQQHQQIQLQQQLQQQSPSLLNNMPRNAQQQQLHQQLLIKQQWQMQLQQQQLQQQQQQQQQQQHSPAYSATQQVSQGSPTPSAFGPSSPQVVQNRPFNGGSSSSSSSGGGGGGSGSVNGGVSSGVSQSSRFKNTNTSVNNSSNDKNATTTNNNPASSSTPAASSATAGFGVSGAALGSLSASVTQPPPINTSSITAASVSASASTTSVAGTPIAATFTDDRPPLSATPSVHTHRGMATPTASAGVELKSPRGVTVPLTYAGSTHQDQGLNSSSSIGGEGVSGSGGMGLSSPPILDQHLLLQQHTLGVQDLHSNTNEYASSVGVMGSVPTSVQPANSIPSIPTMTTMGNISSLPAFSTVAHSGASFTTLAAAAINVPELQHDHTSSWPGEATGDPFSLGSGRDNFISGTTNTVMGSSSAAGTKNSNCDVAQYDEASLDEFFNLDYESPPAPSLVATQSLSKEDMAAADGGATAAATATTTGGGGYPQGISTASNTHNIFEDSPSRSSVKRSRDDQGNIETKEPPVPNGGLPSVDEGRRVKACLSQSASIDQIGDAHSSLDSGIVTSHGGLGGLHGAPAVFSENVTDVLENGVDNDLDVLDFLAIPDDIGEESSFSGGANSQEASIAHGISSFDGAIETSSAYHHMSADSSLDALSDLLSSTVDAPHTVNALQPPHLSSDSVSGSFGNNDMGIFSDNASALTNESNAFKISNNGGADAMNAHTFPVVGFPSLQAELANLEAAYTLGSRVITLSDGPGTRLMVVCQFLAQLPTLCFVFHISSLEAYQACLLSPMKAITGNSQPDSATGGGFAGTGLGVGEVNLEELFDLDALDSDGDTATAAVPASGVTTNSGSAMALAGSNLSGGTAHELPPRVLEFEAVSEDPKHTELIARLKVLFGQSTHRLISQVLAMIVQEVPHGG
Length1482
PositionTail
OrganismBatrachochytrium salamandrivorans
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Chytridiomycota> Chytridiomycota incertae sedis> Chytridiomycetes> Rhizophydiales> Rhizophydiales incertae sedis> Batrachochytrium.
Aromaticity0.04
Grand average of hydropathy-0.366
Instability index58.74
Isoelectric point5.09
Molecular weight153283.55
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12419
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     146.48|      18|      18|     593|     610|       1
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   91-  104 (26.59/ 9.79)	....NQ...QQQQ.QQQQQQQQ
  243-  263 (30.49/12.25)	MLMSQQnasQEMM.MQQQQQQQ
  563-  580 (32.71/13.65)	IQLQQH...QQIQ.LQQQLQQQ
  584-  600 (23.72/ 7.98)	LL..NN...MPRNaQQQQLHQQ
  601-  619 (32.97/13.82)	LLIKQQ...WQMQlQQQQLQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     889.88|     145|     145|     728|     872|       2
---------------------------------------------------------------------------
  269-  380 (114.31/33.43)	..................................................................................LQS.......SSEDILSPS.A..STKRTPTA.TTNGASA..GSG.......AVLSMA..TS........................HSTPGA.TTSASSNS..MARSNP...vstL.....GMpTVPM....SPHISPAsvLNSPNAHG...GTTVS..A..GGP..S..LQ.SPQT.SP..NI..MM...........P...QS..............................
  381-  561 (112.18/32.67)	..................GQ.....AVrpnGGISAS.................................nenSTNT....TLQST.......STGATTPISiA..PATPTSIA.GGVSAA..GGHS.......PTTQQV..QSVqlqqlyytlnsqlvqceeilgsqH.QRGL.AAEQV.AI..VQNKKQilhtqlS.....QI.VAQLT.AIQTQQQDL..LRSGARPL...GTGARPlS..GPA..N..GG.STGVLPQggQS..LLrsgsgnaltlqQ...QQQQQQ.............Q............
  581-  713 (91.72/25.40)	.................................SPSllnnmprnaqqqqlhqqllikqqwqmqlqqqqlqqqQQQQ....QQQQH.......SP......A.Y..SATQQVSQ.GSPTPSAFG..................PS................................SPQV.....VQNR...................PFN.GGSS........SSSSSGG...GGGGSG.SvnGGVssG..VSqSSRFKNT..NT..SV...........N...NSSNDK.............N...A......TT
  731-  878 (238.29/77.51)	AG.........FGVS...GA.....AL...GSLSAS....................................VTQP....PPINT.......SSITAASVS.A..SASTTSVA.GTPIAATFTDDR.......PPLSAT..PSV.......................HTHRGM.ATPTASAG..VELKSP......R.....GV.TVPLTYAGSTHQDQG..LNSSSSIG...GEGVSG.S..GGM..G..LS.SPPILDQ..HL..LL...........Q...QHTLGV.............QdlhS......NT
  879- 1029 (119.59/35.31)	NE.........YASS...VG.....VM...GSVPTS....................................V.QPansiPSIPTmttmgniSSLPAFSTV.AhsGASFTTLA.AAAI......NV.......PELQ..............................HDHTS..SWPGEATGdpFSLGSG......RdnfisGT.TN..TVMGSSSAAGT..KNSNCDVAqydEASLDE.F..FNL..D..YE.SPP.......................A...PSLVAT.............Q...SlskedmAA
 1030- 1178 (108.71/31.44)	AD.........GGAT...AA.....AT...ATTTGG....................................GGYP....QGIST.......ASNTHNIFE.D..SPSRSSVKrSR.......DDQgnietkePPVPNGglPSV.......................DEGRRVkACLSQSAS..ID........................QIGDAH..........SSLD...SGIVTS.H..GGL..GglHG.APAVFSE..NVtdVL...........EngvDNDLDVldflaipddigeeS...S......FS
 1179- 1308 (105.07/30.14)	GGansqeasiaHGISsfdGAietssAY...HHMSA.................................................D.......SSLDA..LS.D..LLSSTVDA.PHTVNAL....Q.......PPHLSS..DSV..................sgsfgNNDMGI.FSDNASA................................LTNESNA..FKISNN.G...GADAMN.A..HTF..P..VV.GFPSLQA..ELanLE...........A...AYTLG...........................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     151.48|      41|      48|    1354|    1396|       3
---------------------------------------------------------------------------
 1310- 1346 (33.56/13.97)	..RVITLSDGP.........GTRLMVVCQF.L.AQLptlcfvFHISSLEA.
 1354- 1396 (65.19/41.27)	PMKAITGNSQPDSATggGFAGTGLGVGEVN.L.EEL......FDLDALDSD
 1405- 1445 (52.74/26.78)	PASGVTTNS..GSAM..ALAGSNLSGGTAHeLpPRV......LEFEAVSED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.90|      31|      52|       2|      38|       4
---------------------------------------------------------------------------
    2-   38 (42.45/38.77)	SPA..PASATTPSAS.LKGGS.LSSLSafSpriPPhTSQTS
   53-   87 (44.45/21.63)	SPIklEAGAQIQSATdTTGGDeKASLQ..S...PP.TSQPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.61|      21|      56|     106|     127|       5
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  106-  127 (29.83/25.06)	LTLSSVVNEaISNRGSTLQLDE
  164-  184 (35.78/25.11)	LKIDSIVND.LANYGGENELDK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12419 with Med15 domain of Kingdom Fungi
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