<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12417

Description Uncharacterized protein
SequenceMASTNPTGTNAASGLTNPTASTHWAAVYEAFKQAKDARRQGLSDKYVIDGFISAGTYGRVFKARKSPHHSSRDQTSTVVRHTTNASQNTPGTAVPEYAVKKFKPDKEGESALSSGISQSACREIALCRELHHENVVNLEEVMLDPKDRSISMVFEYAEHDLLQILHFHSHHERKIIPEYTVKSFLWQLLNGLAYLHSNWVLHRDLKPANILVTSHGVVKIADLGLARIFRSPVQPLFHGDKVVVTIWYRAPELLLGTRHYTKSIDIWAVGCIFAELLMLRPIFKGEEAKMDAKKNIPFQRDQLVKIFDILGMPTVDRWPALIHMPEYPHLRDIQRPATPNLRPTYFQGSSKRSELGFQLLQSTLEFDPEKRTNADDALSHPYFLDDPKPGANSFLIPGVDRKAFNYPVRRIHDEKQN
Length417
PositionKinase
OrganismBatrachochytrium salamandrivorans
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Chytridiomycota> Chytridiomycota incertae sedis> Chytridiomycetes> Rhizophydiales> Rhizophydiales incertae sedis> Batrachochytrium.
Aromaticity0.09
Grand average of hydropathy-0.420
Instability index39.27
Isoelectric point9.00
Molecular weight47277.34
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12417
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     311.34|      74|      85|     165|     238|       1
---------------------------------------------------------------------------
   94-  162 (72.94/44.54)	...........VPEYAVKKFKPDkegesaLSSGISQSACREIaLCRELHHENVVNLEEVMLDPKD.RSISMVFEYAEHDLL.
  165-  238 (126.94/82.59)	LHFHSHHERKIIPEYTVKSFLWQ......LLNGLAYLHSNWV.LHRDLKPANILVTSHGVVKIAD.LGLARIFRSPVQPLFH
  253-  323 (111.46/71.68)	LLLGTRHYTKSIDIWAVGCIFAE......LLM.LRPIFKGEE.AKMDAK.KNIPFQRDQLVKIFDiLGMPTVDRWPA..LIH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.93|      23|      32|      20|      43|       2
---------------------------------------------------------------------------
   20-   43 (34.80/28.26)	ASThWAAVYEAFKQAKDARRQGLS
   54-   76 (41.14/27.80)	AGT.YGRVFKARKSPHHSSRDQTS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12417 with CDK8 domain of Kingdom Fungi
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