<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12407

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMSFNPRTPQSPSQFSPNVMDQGLGMNTSMTSTAPSLPTPAHSVSGSNLLLDNSQDTAMTDVSSNKRKYSFDDAGVHGHKKVHLDDPRKIGIQDLHLDVGEKYLLCRTPHSISSPCMSDDLFEKFGLTSIAAEVARTKPNGEKNALRKTYKGQIKTLGLSGHFDVVKKEHSAFIDLLMIGDEDWQNRAVSGKDIEKGFSSIQLANLTKATTLARGQIPKALWDTSVLGDLAPGHVSKKAGSDQVPRATAPNTPALSATGAIQKPSKALAPQLDRARRLGKKRSYQDSTFDGYGEGYDDDAGGYSTGDGDDRSSKLKRRKQVHSLDHPSSRNLLADRL
Length336
PositionHead
OrganismRosellinia necatrix (White root-rot fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Xylariomycetidae> Xylariales> Xylariaceae> Rosellinia.
Aromaticity0.05
Grand average of hydropathy-0.671
Instability index38.93
Isoelectric point9.11
Molecular weight36415.36
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364151

GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12407
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.78|      17|      17|     230|     246|       1
---------------------------------------------------------------------------
  230-  246 (32.45/24.36)	AP........GHVSK..KAGSDQVPRA
  248-  274 (18.33/10.41)	APntpalsatGAIQKpsKALAPQLDRA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.81|      21|      21|      66|      86|       2
---------------------------------------------------------------------------
   66-   86 (38.57/21.21)	RKYSFDDAGVH.GHKKVHLDDP
   87-  108 (33.25/17.49)	RKIGIQDLHLDvGEKYLLCRTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.82|      22|      22|       7|      28|       3
---------------------------------------------------------------------------
    7-   28 (41.23/27.22)	TPQSPSQFSP..NVMDQGLGMNTS
   30-   53 (32.59/20.04)	TSTAPSLPTPahSVSGSNLLLDNS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12407 with Med19 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GYDDDAGGYSTGDGDDRSSKLKRRKQVHSLDHPSSRNLLADRL
2) MSFNPRTPQSPSQFSPNVMDQGLGMNTSMTSTAPSLPTPAHSVSGSNLLLDNSQDTAM
3) PGHVSKKAGSDQVPRATAPNTPALSATGAIQKPSKALAPQLDRARRLGK
294
1
231
336
58
279










Molecular Recognition Features






MoRF SequenceStartStop




1) KLKRRKQVHSLDHPSSRNLLADRL
313
336