<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12402

Description U-box domain-containing protein 33-like
SequenceMELLNLHHPPHFSSLNALHGFYSSSTLLPTMLNPRLCGVVEEASGGDSGDFVYVAVGKSFEKSTSLLRWTFRCFGDKEIRLLHVHQLSTVIPTLLGKLPASQANTDVVAAYRKKEWEQTSQLLENYLGYCHRAKVKAGIVMMEAEQVQIGIVDLVNKYNVRKLVMGTMADSCVRMKVKKSSSKADYAARNIPLPCEILFVNKGNHVWTREAVEGSCSASSSLLHELAITTNFCSQSSLVDNSQSCDQQYSHSSSANGIIEGLNCIDKEPFHVEGVMSSSLDIHFPCPLQISSSSASTSSDSGYSSVEGREPTRSDSKVEERGLNGELKDAILETEASRNEAIAMHLICRKMEQEAAESIKKFKVFKCVNEHEIDLRRETEEVLRTIIEKKQTLSEERIEIREELERTMKTLALLDTQAREVNQKQEEATAELKNIQASIVVLKKEKRTIQSQKMNALNWLSQWNSQEVVLENYNASIRVMEHQPQLIEFTFLELQMATCEFSEKFKISHGGYGCLYKGEMLGKTVAIRKLHPHYILGPAEFREEVEVLGKLQHPHLVTLLGVCTEACSLIYEYLPHGNLQSHLFRKGNTPPLTWKTRARIIAEIASALCFLHSSKPEKIVHGDLKPENILLDSELTSKICDFGIHRLVSEETLYCPSFRRSTEPKGAFSHTDPECQRDGVLTPKSDIYSFGLIILQLLSGKPIVGLVIELRKAISFGRLESVLDLSAGEWPVDVARRLVDIGLQCCELKGSDRPELTPTIVRELKQLQNFEERPVPSYFLCPILQEIMQDPQVAADGFTYEGEAIHEWLNNGRETSPMTNLKLNHLHLTPNHVVRLAIQDWLCRV
Length845
PositionTail
OrganismCucumis melo (Muskmelon)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.07
Grand average of hydropathy-0.267
Instability index45.99
Isoelectric point6.09
Molecular weight95085.85
Publications
PubMed=22753475

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12402
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.21|      15|      16|     415|     429|       1
---------------------------------------------------------------------------
  415-  429 (24.74/20.64)	DTQAREVNQKQEEAT
  434-  448 (23.46/19.16)	NIQASIVVLKKEKRT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     144.66|      48|      59|     212|     270|       2
---------------------------------------------------------------------------
  212-  263 (75.87/82.90)	VEGscSASSSL.LH...ELAITTNFCSQSSlvDNSQSCDQQYSHSSSANGIIE.GLN
  272-  324 (68.79/43.73)	VEG..VMSSSLdIHfpcPLQISSSSASTSS..DSGYSSVEGREPTRSDSKVEErGLN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     179.23|      44|      45|     599|     643|       3
---------------------------------------------------------------------------
  493-  523 (44.24/24.12)	....ELQMATC..EF..SEKF.KISHGGY...GCLYKGEMLGK.......
  599-  643 (73.40/48.96)	RIIAEIASALC..FLHSSKPE.KIVHGDLkPENILLDSELTSK..ICDFG
  646-  691 (61.58/36.38)	RLVSE.ETLYCpsFRRSTEPKgAFSHTD..PE.CQRDGVLTPKsdIYSFG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.27|      14|      61|      18|      32|       4
---------------------------------------------------------------------------
   18-   32 (21.96/17.52)	LHgFYSSSTLLPTML
   82-   95 (25.32/14.76)	LH.VHQLSTVIPTLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      25.43|       9|      16|     332|     342|       6
---------------------------------------------------------------------------
  332-  342 ( 9.79/13.01)	LETEASrnEAI
  351-  359 (15.65/ 9.89)	MEQEAA..ESI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12402 with Med32 domain of Kingdom Viridiplantae
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