<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12401

Description U-box domain-containing protein 35-like isoform X2
SequenceMRLNGLWNICSIGRTLAIVFLFMFGVRACIPVEEADSIPKEYRPPTEAELHQFFLPYRGFCARKGIVAKEIIIHDIDVPNALIDHVSKHSISNIVVGASNRNPIMRKFKNPDVATCLLKSAPESCSVYVIARGKVHTKRLRKRNKSQTDMNESQTGTPRVGSSLSKTRKSAYSSISGLSEDKYRDSSGTSNDSMSGISDFSGPLSFKSIETSFENLDFSPSSSETSTRSYVSSSTPPSIESEMKRLRFELKQMMEMYDSASKEAAVAKQKAKELEQLKMEKEEDDKIERGKSADEALTALAEFEKQKNKAAAEATLVAQKLAELETQKKQIITEEKARIEAEERKKTMELFERSNICYRRYSIDEIEVATDHFNESNKIGEGGYGPVYQALLDHTSVAIKILRPDRSHGQRQFQQEIEVLSRMRHPHMVLLLGACPEYGCLVYEYMENGSLEDRLFRKDNTPPIPWRIRFRIACDIATALLFLHQMKPEPVVHRDLKPANILLDHNYVSKIGDVGLARLVPPSVADSVTQYHMTAAAGTFCYIDPEYQQTGMLGVKSDIYSFGVLLLQLITARSPMGLSYQVEEAIEHDKFPEILDPTITDWPIEDTLGLAQLALKCCELRKRDRPDLRTVLMPELSRLKNLGLGETPPKSKLANVSKAHDQQPPNSAPVLKGSESEIYVRKRWQRLQVSTRFWSQKGIGVNTISSQIKKRWSIPSIPISGKRVDVMKKKQQQQQHLQSSQRCWSFASCASAANMGWKKLNSFS
Length764
PositionTail
OrganismCucumis melo (Muskmelon)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.07
Grand average of hydropathy-0.474
Instability index51.86
Isoelectric point8.94
Molecular weight86211.76
Publications
PubMed=22753475

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12401
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     309.53|      96|     132|     429|     532|       1
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  429-  532 (151.99/120.48)	VLLLGACPEYGCLVYEYMENGSLEDRLFRKDNTPPIP.WRIrfriacDIATALLFLhQMKPEPVVHRDLKPANILLDHNyVSKIGDVGLARLVPPSVADSVTQYH
  564-  660 (157.54/101.66)	VLLLQLITARSPMGLSYQVEEAIEHDKFPEILDPTITdWPI......EDTLGLAQL.ALKCCELRKRDRPDLRTVLMPE.LSRLKNLGLGETPPKSKLANVSKAH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.05|      17|      18|     291|     307|       2
---------------------------------------------------------------------------
  291-  307 (29.86/20.38)	KSADEA.LTA..LAEFEKQK
  309-  328 (19.19/10.60)	KAAAEAtLVAqkLAELETQK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     204.04|      64|     103|      87|     153|       3
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   87-  153 (104.54/79.11)	SKHSISNI..VVGASNRNPIMRKFKNPDVATcllKSAPESCSVYVIARG....KVHTKRLRKRNKSQTDMNES
  190-  259 (99.50/66.81)	SNDSMSGIsdFSGPLSFKSIETSFENLDFSP...SSSETSTRSYVSSSTppsiESEMKRLRFELKQMMEMYDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.56|      11|      49|     685|     695|       4
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  685-  695 (22.36/12.06)	QRLQVSTRFWS
  735-  745 (24.19/13.54)	QHLQSSQRCWS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12401 with Med32 domain of Kingdom Viridiplantae
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