<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12393

Description uncharacterized protein LOC103486878
SequenceMDKKASMATATTDWRTEITKETRQKKFHSIWMVLERQFSGQFNMNVISDHARKHEMKLFSQANSTDEYLNAGIGKLSKRENHRGSSSSRAAVVYPQYHQPTPQLRRQHPKVRQAHQQFAMQNQSCASLQNTSNSQSRPQGFQRQDIGIHLSSEMFTQHPNFVNLTTQVEKEANSEGFKASKSLHQHEQHKQQHSMRASAERIPSSEVLHDAAFAEMEQLKKTFLPLIIKAYEPYRKVHPDAQHKNRLMKTLERILTFFHSPKEKIIASYTKERFYRCLKYIEQFGNTIKCNTNVANKQSSLHGGQPGLSGSRINHPLQQSDNVKLPCQSVIRATTGSSGSSSPIAPQEKGSVRSETDYIQKNLLQNRQHYKSIKSKVHPQWIHASGNTPATYRSGMSLNHHLNSNFSHQIHDASQLCHVAERPRPTKPCTSPLYGIASPAPSSPIVGLEKTSPNVTYHSGLNFQSPQHCNPYQLLHSKTETQVPSQKIRSSSAMTSPVAEPTSPGINGQFSTYQAYSRLLKAVGSSSRAALRAAVSGITSVGYMEDAIIDPRCHAMVTNLRLLNGCGSSNNMKRKINAMALNNIPSPRSDIPGSEETVTSRTKKLKKHTDSSLLEEIRNINKQFIETVLELDVDENLNRRLANAGTVLRCSYSAVIDGTNSEAYPVKLPVLTMKLLVPLDYPEDYPVFLSKFDSGSSNVDEECSNLSNEAMSMLRAFLRTAPECVSLEEYARVWDECARSVVSDYVQRAGGGSFSARYGTWEDSVATA
Length768
PositionTail
OrganismCucumis melo (Muskmelon)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.07
Grand average of hydropathy-0.657
Instability index54.05
Isoelectric point9.38
Molecular weight85934.78
Publications
PubMed=22753475

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12393
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      81.10|      25|      26|     300|     324|       1
---------------------------------------------------------------------------
  300-  317 (27.27/11.61)	....................................SLHGGQPGL..SGSRINHPL
  318-  344 (30.98/14.04)	QQSDNVK.........................lpcqSVIRATTGS..SGS..SSPI
  347-  402 (22.85/ 8.70)	QEKGSVRsetdyiqknllqnrqhyksikskvhpqwiHASGNTPATyrSGMSLNHHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     201.99|      51|      51|     151|     201|       2
---------------------------------------------------------------------------
  101-  148 (73.78/42.73)	TPQLRRQHPKVRQAHQQFAM...QNQS...CASLQNTSNSQSRPQGFQRQDIGI
  151-  201 (83.19/49.12)	SSEMFTQHPNFVNLTTQVEK...EANSEGFKASKSLHQHEQHKQQHSMRASAER
  204-  246 (45.02/23.17)	SSEVL.HDAAFAEM.EQLKKtflPLIIKAYEPYRKVHPDAQHKNR.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     169.46|      53|      85|     466|     526|       3
---------------------------------------------------------------------------
  415-  464 (39.89/15.42)	QLCHV.AERPRPTKPCTSplygiaSPAPSSPIVglEKTSPnvtyhsG......LNFQ.................
  473-  526 (89.55/71.62)	QLLHSkTETQVPSQKIRS......SSAMTSPVA..EPTSP......G......INGQFSTYQAYSRLLKAVGSS
  530-  569 (40.02/18.05)	..........................ALRAAVS..GITSV......GymedaiIDPRCHAMVTNLRLLNGCGSS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12393 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LNAGIGKLSKRENHRGSSSSRAAVVYPQYHQPTPQLRRQHPKVRQAHQQFAMQNQSCASLQNTSNSQSRPQGFQRQDIGIH
2) PNFVNLTTQVEKEANSEGFKASKSLHQHEQHKQQHSMRASAERI
3) SKVHPQWIHASGNTPATYRSGMSLNHHLNSN
4) YQLLHSKTETQVPSQKIRSSSAMTSPVAEPTSPGIN
69
159
375
472
149
202
405
507










Molecular Recognition Features






MoRF SequenceStartStop




NANANA