<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12392

Description U-box domain-containing protein 33-like isoform X1
SequenceMAVVSAVQATTPRVGPINYAEASPIMISSSREIVEEPVGAVSEDIIYVAVGKDVKECLSVLRYALKSSRGKKICLLHVHVPAQMIPLMGTKFPANSLEKEEVKAYHEFEKQNLPRVMNEYILYCLQEGVHADKLCGEAKYIEKGIVDMISLHRIDKLVMGAAVDKCYSRKMVDLKSKKAIYVRSQAPAFCHIEFICKGNLICTREGISDEAQVETIISSPQISPDAESSEVTHRRSQSLPLGQDNSREVGSPSSSLRPRGRSLLLDHFRGNILDPSSPDIRSGVHAARNLEVNEAKDEWGLLTRRSPSERSENSTRSPRGVIDMAPSPFFRVELCANGLEQDGNTSDNLYNQCERVMMEAANARREAFLEAIARRKSEKETVNALHRVRVAEGLYAEELKQRKEVEQELAKEKAKLESIKTQLNEEMEELRIAQDQKASLERDLLEADLTAKELEQKILSAVELLQSYKREREELQIQRDNALREAEELRENQSTGRDLTQFFTEFPFREIEEATKNFDPSLKIGEGGYGSIFRGNLRHTMVAIKILHSDSSQGPSEFQQEVNVLSKMRHPNLVTLIGACPEAWVLIYEYLCNGSLEDRLSCKDNTPPLSWQIRIRIATELCSALMFLHSSKPHSIIHGDLKPANVLLDANFVCKLGDFGICRLLSRDEMLNSETLVWRTDNPKGTFAYMDPEFLSSGELTTKSDVYSFGIILLRLLTGRSAMGISKEVQYAMANGNLESILDPLAGDWPFVQAEQLARLALRCCDMKRKSRPDLITDVWRVLGPMRASCGGRLSIQLGSAEHSQPPSYFICPIFQEVMQDPHVAADGYTYEAEAMRGWLDSGHDTSPMTNLKLEHRNLVPNRALRSAIQEWLHHN
Length876
PositionTail
OrganismCucumis melo (Muskmelon)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.06
Grand average of hydropathy-0.389
Instability index49.73
Isoelectric point5.87
Molecular weight98545.30
Publications
PubMed=22753475

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12392
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     183.11|      63|     466|     173|     242|       1
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  173-  242 (91.00/69.97)	DLKSKKAIYvrsQAPAFCHI.EF.ICKgnLICTREGISDEAQVETiISSPQ.....ISPDAESS.EVThRRSQSLPLG
  640-  710 (92.10/50.72)	DLKPANVLL...DANFVCKLgDFgICR..LLSRDEMLNSETLVWR.TDNPKgtfayMDPEFLSSgELT.TKSDVYSFG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     286.01|      90|     262|     247|     348|       2
---------------------------------------------------------------------------
  247-  348 (140.84/104.91)	REVGSPSSSLRPR...GRSLLLDHFRGNiLDPSSPDIRSgVHAARNLEVNEAKDEWGLLTRrspsersensTRSPRGV..IDMAPSPFFRV..ELCANGLEQDGNTSDN
  509-  605 (145.17/83.45)	REIEEATKNFDPSlkiGEGGYGSIFRGN.LRHTMVAIKI.LHSDSSQGPSEFQQEVNVLSK..........MRHPNLVtlIGACPEAWVLIyeYLCNGSLEDRLSCKDN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12392 with Med32 domain of Kingdom Viridiplantae
Unable to open file!