Description | pre-mRNA-processing protein 40A-like isoform X1 |
Sequence | MASNPPPSGPQPLWPPSVGSTPPQGFGSSFPMQFRPAVSTQQGQPFASSISASPQYRPIGQTPNAGMPPGHGQIPQFSQPMQQFPPRPSQPGHGILSSQAIQMPFIQSSMPQPQQVIPPLNSHMPGVSGAGNPFSSSYTFAPPPFAQALSGLNMPSQVQSSSQMHVPPFPSGGQPWLSSGSQTTPVAAPTLLTSQQLSAIAPSVPAGTASQQNASDWQEYEAADGRRYYYNKITKQSSWEKPLELMTTLERADASTVWKEFTTADGRKYYYNKETKQSKWTIPEELKLARELAEISADQVVQTGASTISGVQVTAAVTSTEQPSAVTPASSTPSSTVSGVASSPVPVTSAVSDHASPLVVSGSSAIPAVTPAMPSSSGVSSPAVSGSTGSATLANASQKQMSGFENLSPQVASSLSGASIQDIEEAKKGMAVAGKVNVVPAEEKTTEEEPFLYATKQEAKNAFKALLEFANVESDWTWEQTMRVIINDKRYGALKTLGERKQAFNEYLMQRKKQEAEERRHRQRKAKEEFTKMLEESKELISSTRWSKAVTMFEDDERFKAVEREADREDLFRNYLVDLQKKERAKAQEEYRHNRLEYRQFLETCGFIKVDTQWRKVQDLLEDDERCSRLEKIDRLDIFQEYIRDLEKEDEEQRKLQKEQLRRTERKNRDAFRKMMEEQIAAGTLTAKTSWRDYCQMVKEYVAYQAVASNTSGSTPKDLFEDVVEELEKQYHEDKIRVKDVVKSEKITISSTWTFEDFKAAILEGIGSPSIHDVNLQLIFEDIIERAKEKEEKESKKRQRLAKDFTDKLSTIKEITASSSWEECKELVEDSSEFRAIGEETISRAVFEEYVAWLQEKAKEKERRREEEKAKKEKEKEEKEKRKDKERREKEREKEKEREKEKERGKERSTKDEADSESMDVTDNYEPKEERKREKDKERKHRKRHHISNDEVTSDKDEKVEPERDKERKHRKRHHSSNDEVASDKDEKEESKRSRRHSSDRKKSKKLAHSPESDGESRHKRHRRDHRDGSRRNGGYEELEDGELGEDGES |
Length | 1050 |
Position | Unknown |
Organism | Nicotiana tabacum (Common tobacco) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana. |
Aromaticity | 0.07 |
Grand average of hydropathy | -1.062 |
Instability index | 62.56 |
Isoelectric point | 6.14 |
Molecular weight | 119113.93 |
Publications | PubMed=24807620 |
Annotated function |
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GO - Cellular Component | U1 snRNP GO:0005685 IBA:GO_Central U2-type prespliceosome GO:0071004 IBA:GO_Central |
GO - Biological Function | RNA binding GO:0003723 IBA:GO_Central |
GO - Biological Process | mRNA cis splicing, via spliceosome GO:0045292 IEA:InterPro mRNA splicing, via spliceosome GO:0000398 IBA:GO_Central |
Binary Interactions |
Repeats | >MDP12359 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 5| 145.18| 26| 27| 934| 959| 1 --------------------------------------------------------------------------- 512- 528 (21.28/ 6.14) .......K...KQE......AEER..RHRQRK..AKE 873- 894 (21.66/ 6.38) E.....KE...KEEK.ekRKDKER..REKEREK.... 917- 950 (33.69/14.06) EsmdVTDNyepKEER.krEKDKER..KHRKRHHISND 951- 979 (44.66/21.06) E...VTSD...KDEKvepERDKER..KHRKRHHSSND 980- 1000 (23.89/ 7.81) E...VASD...KDEK.........eeSKRSRRH.SSD --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 145.28| 38| 40| 208| 245| 2 --------------------------------------------------------------------------- 208- 245 (76.15/43.48) TASQQNASD.WQEYEAADGRRYYYNKITKQSSWEKPLEL 248- 286 (69.13/38.83) TLERADASTvWKEFTTADGRKYYYNKETKQSKWTIPEEL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 6| 413.63| 62| 66| 529| 590| 3 --------------------------------------------------------------------------- 457- 510 (55.08/25.05) Q...........EaknaFKALLEF...A.NVESDWTWEQTMRVIINDKRYGALKTLGE...RKQAFNEYLMQ..................... 529- 589 (93.78/47.09) ............E....FTKMLEE...SKELISSTRWSKAVTMFEDDERFKAVEREAD...REDLFRNYLVDLQ.....K..K...ERAKAQE 590- 658 (78.80/38.56) E.....yrhnrlE....YRQFLET...CGFIKVDTQWRKVQDLLEDDERCSRLEK.ID...RLDIFQEYIRDLE.....K..E.deEQRKLQK 659- 740 (62.09/29.05) EqlrrterknrdA....FRKMMEEqiaAGTLTAKTSWRDYCQMVKEYVAYQAVASNTSgstPKDLFEDVVEELE.....K..QyheDKIRVKD 741- 791 (49.33/21.78) V........vksE...............KITISST.WT.....FED...FKAAILEGI...GSPSIHD..VNLQlifedI..I...ERAKEKE 792- 866 (74.53/36.13) EkeskkrqrlakD....FTDKLST...IKEITASSSWEECKELVEDSSEFRAIGEETI...SRAVFEEYVAWLQ.....EkaK...EKERRRE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 6| 193.31| 26| 26| 66| 91| 4 --------------------------------------------------------------------------- 5- 34 (37.76/18.03) PP.PSgpQP....L........WPPSV.GSTPPqgFgsSFPMQ.F 62- 84 (33.81/15.33) .......TP..naG........MPPGH.GQIPQ..F..SQPMQQF 85- 116 (34.94/16.10) PPRPS..QP..ghGilssqaiqMPFIQ.SSMP.......QP.QQV 117- 141 (29.69/12.51) IP......P.lnsH........MPGVS.GAGNP..F..SSSYTFA 142- 166 (29.48/12.37) PPPFA..QAlsglN........MP....SQVQS..S..SQ..MHV 167- 184 (27.63/11.10) PPFPS......................gGQ.PW..L..SSGSQTT --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 98.07| 27| 28| 377| 403| 5 --------------------------------------------------------------------------- 309- 339 (30.39/13.18) SGVQvTAAVTSTEQPSAVTP..ASStpsSTVSG 377- 403 (45.47/23.03) SGVS.SPAVSGSTGSATLAN..ASQ...KQMSG 405- 430 (22.22/ 7.85) ENLS..PQVASSLSGASIQDieEAK...KGM.. --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) GYEELEDGEL 2) KKSKKLAHS 3) SRHKRHRRDHRD | 1035 1002 1017 | 1044 1010 1028 |
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