Description | pre-mRNA-processing protein 40A-like isoform X4 |
Sequence | MASNPPPSGPQPLWPPSVGSTPPQGFGSSFPMQFRPAVSTQQGQPFASSISASPQYRPIGQTPNAGMPPGHGQIPQFSQPMQQFPPRPSQPGHGILSSQAIQMPFIQSSMPQPQQVIPPLNSHMPGVSGAGNPFSSSYTVQSSSQMHVPPFPSGGQPWLSSGSQTTPVAAPTLLTSQQLSAIAPSVPAGTASQQNASDWQEYEAADGRRYYYNKITKQSSWEKPLELMTTLERADASTVWKEFTTADGRKYYYNKETKQSKWTIPEELKLARELAEISADQVVQTGASTISGVQVTAAVTSTEQPSAVTPASSTPSSTVSGVASSPVPVTSAVSDHASPLVVSGSSAIPAVTPAMPSSSGVSSPAVSGSTGSATLANASQKQMSGFENLSPQVASSLSGASIQDIEEAKKGMAVAGKVNVVPAEEKTTEEEPFLYATKQEAKNAFKALLEFANVESDWTWEQTMRVIINDKRYGALKTLGERKQAFNEYLMQRKKQEAEERRHRQRKAKEEFTKMLEESKELISSTRWSKAVTMFEDDERFKAVEREADREDLFRNYLVDLQKKERAKAQEEYRHNRLEYRQFLETCGFIKVDTQWRKVQDLLEDDERCSRLEKIDRLDIFQEYIRDLEKEDEEQRKLQKEQLRRTERKNRDAFRKMMEEQIAAGTLTAKTSWRDYCQMVKEYVAYQAVASNTSGSTPKDLFEDVVEELEKQYHEDKIRVKDVVKSEKITISSTWTFEDFKAAILEGIGSPSIHDVNLQLIFEDIIERAKEKEEKESKKRQRLAKDFTDKLSTIKEITASSSWEECKELVEDSSEFRAIGEETISRAVFEEYVAWLQEKAKEKERRREEEKAKKEKEKEEKEKRKDKERREKEREKEKEREKEKERGKERSTKDEADSESMDVTDNYEPKEERKREKDKERKHRKRHHISNDEVTSDKDEKVEPERDKERKHRKRHHSSNDEVASDKDEKEESKRSRRHSSDRKKSKKLAHSPESDGESRHKRHRRDHRDGSRRNGGYEELEDGELGEDGES |
Length | 1032 |
Position | Unknown |
Organism | Nicotiana tabacum (Common tobacco) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana. |
Aromaticity | 0.06 |
Grand average of hydropathy | -1.082 |
Instability index | 61.88 |
Isoelectric point | 6.14 |
Molecular weight | 117258.81 |
Publications | PubMed=24807620 |
Annotated function |
|
GO - Cellular Component | |
GO - Biological Function | |
GO - Biological Process | mRNA cis splicing, via spliceosome GO:0045292 IEA:InterPro |
Binary Interactions |
Repeats | >MDP12358 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 7| 219.98| 28| 28| 916| 943| 1 --------------------------------------------------------------------------- 771- 804 (22.77/ 6.47) EKEE......KESKKRQRlakdftDKLSTiKEITasSSWE 860- 879 (23.89/ 7.13) EK...ekRKDKERREKER......EK...........EKE 880- 908 (30.34/10.98) REKE..kERGKERSTKDE......ADSES.MDVT..DNYE 909- 939 (46.16/20.43) PKEErkrEKDKERKHRKR......HHISN.DEVT..SDKD 940- 968 (45.80/20.22) EKVE..pERDKERKHRKR......HHSSN.DEVA..SDKD 969- 988 (23.30/ 6.78) EKEE.........SKRSR......RH.SS.DRKK..SKK. 1005- 1031 (27.73/ 9.42) .RRD...HRDGSRRNGGY......EELED.GELG..EDGE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 145.18| 38| 38| 190| 227| 2 --------------------------------------------------------------------------- 190- 227 (75.20/39.46) TASQQNASD.WQEYEAADGRRYYYNKITKQSSWEKPLEL 230- 268 (69.97/36.28) TLERADASTvWKEFTTADGRKYYYNKETKQSKWTIPEEL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 6| 153.55| 21| 23| 54| 74| 3 --------------------------------------------------------------------------- 15- 34 (18.81/ 6.06) PPsVGSTP....P..Q....GFG.............sSFpMQF 35- 56 (26.38/11.73) RP.AVST.QQGQPfaS....SIS..............AS.PQY 57- 77 (40.58/22.37) RP.IGQTPNAGMP..P....GHG..............QI.PQF 79- 113 (27.05/12.24) QP.MQQFPPRPSQ..P....GHGilssqaiqmpfiqsSM.PQP 309- 326 (20.33/ 7.20) TP.ASST.PSSTV..S....GVA..............SS.P.. 327- 351 (20.40/ 7.25) VP.VTSAVSDHAS..PlvvsGSS..............AI.PAV --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 81.86| 23| 23| 585| 607| 4 --------------------------------------------------------------------------- 477- 500 (19.17/ 8.49) KTL.......GerkqaFNEY.........LMQ.RKKQ...EAEE 501- 539 (21.14/10.19) RRHrqrkakeE.....FTKMleeskelisSTRWSKAVTMFEDDE 585- 607 (41.56/27.71) ETC.......G.....FIKV.........DTQWRKVQDLLEDDE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 163.52| 39| 207| 613| 651| 5 --------------------------------------------------------------------------- 549- 577 (43.88/20.89) ...............DREDLFRNYLVDLQ...KK.....ERAKAQ.EEYR....HNR 613- 651 (65.15/34.44) EKI............DRLDIFQEYIRDLE...KEDE...EQRKLQKEQLRRTERKNR 660- 699 (27.12/10.20) EQIaagtltaktswrDYCQMVKEYV..............AYQAVASNTSGSTPK... 822- 855 (27.37/10.35) ETI............SR.AVFEEYVAWLQekaKEKErrrEEEKAKKE.......... --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 63.25| 15| 22| 123| 137| 6 --------------------------------------------------------------------------- 123- 137 (28.67/16.52) HMPGVSGAGNPFSSS 147- 161 (34.58/21.62) HVPPFPSGGQPWLSS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 45.12| 14| 22| 726| 746| 7 --------------------------------------------------------------------------- 726- 739 (24.93/31.72) SEKIT.ISSTWTFED 750- 764 (20.19/ 6.10) SPSIHdVNLQLIFED --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 53.30| 19| 73| 286| 304| 8 --------------------------------------------------------------------------- 286- 304 (30.38/16.69) GAS..TISGVQ.VTAAVTSTEQ 377- 398 (22.92/10.95) NASqkQMSGFEnLSPQVASSLS --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) GYEELEDGEL 2) KKSKKLAHS 3) SRHKRHRRDHRD | 1017 984 999 | 1026 992 1010 |
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