Description | pre-mRNA-processing protein 40A-like isoform X3 |
Sequence | MASNPPPSGPQPLWPPSVGSTPPQGFGSSFPMQQGQPFASSISASPQYRPIGQTPNAGMPPGHGQIPQFSQPMQQFPPRPSQPGHGILSSQAIQMPFIQSSMPQPQQVIPPLNSHMPGVSGAGNPFSSSYTFAPPPFAQALSGLNMPSQVQSSSQMHVPPFPSGGQPWLSSGSQTTPVAAPTLLTSQQLSAIAPSVPAGTASQQNASDWQEYEAADGRRYYYNKITKQSSWEKPLELMTTLERADASTVWKEFTTADGRKYYYNKETKQSKWTIPEELKLARELAEISADQVVQTGASTISGVQVTAAVTSTEQPSAVTPASSTPSSTVSGVASSPVPVTSAVSDHASPLVVSGSSAIPAVTPAMPSSSGVSSPAVSGSTGSATLANASQKQMSGFENLSPQVASSLSGASIQDIEEAKKGMAVAGKVNVVPAEEKTTEEEPFLYATKQEAKNAFKALLEFANVESDWTWEQTMRVIINDKRYGALKTLGERKQAFNEYLMQRKKQEAEERRHRQRKAKEEFTKMLEESKELISSTRWSKAVTMFEDDERFKAVEREADREDLFRNYLVDLQKKERAKAQEEYRHNRLEYRQFLETCGFIKVDTQWRKVQDLLEDDERCSRLEKIDRLDIFQEYIRDLEKEDEEQRKLQKEQLRRTERKNRDAFRKMMEEQIAAGTLTAKTSWRDYCQMVKEYVAYQAVASNTSGSTPKDLFEDVVEELEKQYHEDKIRVKDVVKSEKITISSTWTFEDFKAAILEGIGSPSIHDVNLQLIFEDIIERAKEKEEKESKKRQRLAKDFTDKLSTIKEITASSSWEECKELVEDSSEFRAIGEETISRAVFEEYVAWLQEKAKEKERRREEEKAKKEKEKEEKEKRKDKERREKEREKEKEREKEKERGKERSTKDEADSESMDVTDNYEPKEERKREKDKERKHRKRHHISNDEVTSDKDEKVEPERDKERKHRKRHHSSNDEVASDKDEKEESKRSRRHSSDRKKSKKLAHSPESDGESRHKRHRRDHRDGSRRNGGYEELEDGELGEDGES |
Length | 1042 |
Position | Unknown |
Organism | Nicotiana tabacum (Common tobacco) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana. |
Aromaticity | 0.07 |
Grand average of hydropathy | -1.068 |
Instability index | 62.74 |
Isoelectric point | 6.09 |
Molecular weight | 118226.94 |
Publications | PubMed=24807620 |
Annotated function |
|
GO - Cellular Component | |
GO - Biological Function | |
GO - Biological Process | mRNA cis splicing, via spliceosome GO:0045292 IEA:InterPro |
Binary Interactions |
Repeats | >MDP12357 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 144.84| 38| 38| 200| 237| 1 --------------------------------------------------------------------------- 200- 237 (76.12/40.84) TASQQNASD.WQEYEAADGRRYYYNKITKQSSWEKPLEL 240- 278 (68.72/36.23) TLERADASTvWKEFTTADGRKYYYNKETKQSKWTIPEEL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 7| 235.65| 36| 36| 852| 887| 2 --------------------------------------------------------------------------- 510- 549 (24.31/ 8.54) ...ERR..............H...RQRKAKE.....EFTKmlE...ES.....K.ELISSTRwskavtmfeDDE 617- 658 (20.71/ 6.03) ER.CSRlekidrldifqeyiR...DLEKEDE.....EQRK..L...QKEQLRRT.ER................. 852- 887 (58.07/32.02) EK.ERR..............R...EEEKAKK.....EKEK..E...EKEKRKDK.ERREKER.........EKE 889- 918 (39.50/19.10) ER.E................K...EKERGKE.....RSTK..D...EA....DS.ESMDVTD.........NYE 919- 959 (41.30/20.35) PKeERK..............R...EKDKERK.....HRKR..HhisNDEVTSDKdEKVEPER.........DKE 961- 982 (23.49/ 7.97) ...........................KHRK.....RHHS..S...NDEVASDK.D..EKE............E 983- 1023 (28.28/11.30) SK.RSR..............RhssDRKKSKKlahspESDG..E...SRHKRHRR.DHRDGSR............ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 5| 270.11| 40| 40| 96| 135| 3 --------------------------------------------------------------------------- 16- 67 (46.04/20.05) PsVGSTPPqgfGSSfpmQQGQPFASSIS..ASP.........qyrPIGQtpnAGMPPGHGQIP 72- 110 (70.43/34.39) P.MQQFPP...RPS...QPGHGILSSQA.I.QM............PFIQ...SSMPQPQQVIP 111- 152 (65.42/31.44) P.LNSHMP...GVS...GAGNPFSSSYT.FAPP............PFAQ.alSGLNMPSQVQS 153- 197 (40.63/16.87) S.SQMHVP...PFP...SGGQPWLSSGS.QTTPvaaptlltsqqlSAIA...PSVP....... 325- 373 (47.60/20.96) P..SSTVS...GVA...SSPVPVTSAVSdHASP...lvvsgssaiPAVT...PAMPSSSGVSS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 209.75| 53| 65| 710| 774| 4 --------------------------------------------------------------------------- 433- 498 (62.36/34.83) AEEKTTEEEpflyatKQE...AKNAFKA..llEFANVESDWTWEQTMRVIindkrygaLKTLGER..K....QA.FNE 718- 774 (82.14/76.75) ELEKQYHED......KIR...VKDVVKS....EKITISSTWTFEDFKAAI........LEGIGSPSIHdvnlQLIFED 779- 841 (65.25/37.13) AKEKEEKES......KKRqrlAKDFTDKlstiKEITASSSW..EECKELV...edsseFRAIGEETIS....RAVFEE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 38.20| 10| 66| 559| 568| 5 --------------------------------------------------------------------------- 559- 568 (19.17/11.07) DREDLFRNYL 626- 635 (19.03/10.94) DRLDIFQEYI --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 64.00| 20| 21| 661| 681| 6 --------------------------------------------------------------------------- 661- 681 (29.15/24.62) RDaFRKMMEEQIAAGTLTAKT 684- 703 (34.84/24.74) RD.YCQMVKEYVAYQAVASNT --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 39.95| 12| 25| 374| 385| 9 --------------------------------------------------------------------------- 374- 385 (20.47/12.23) PAVSGSTGSATL 401- 412 (19.48/11.27) PQVASSLSGASI --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) GYEELEDGEL 2) KKSKKLAHS 3) SRHKRHRRDHRD | 1027 994 1009 | 1036 1002 1020 |
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