<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12353

Description U-box domain-containing protein 32-like
SequenceMSGEIGVINAEGICDGENTVFVAVGKNVKEGKSILSWALKSFSVRRICILHVHPSNHLLSGKVSGTKLKQHMVKACQELERQKLHKFLNQYLLFLSQAGIQGGKVWLEMNNVEKGIIHIIEQHKIQWLVMGAAAETHYSKQLSELKSSKAKFVCQHAPIHCQIWFTCSSYLIHTRSKNCSHLTSKESLSSPKDNGGTKLHDHADDGYEDLNISEDTSMSDDKMVNVEIKGNYSLLRSKNKCETHLHRSTSLPILEEGGFHTKPSSDERSRLDHAENSKKSAFEESVKRWRAEEDAMEAIHMAEVSYKLSKEEEGRRKEKEEILAKQKEEVERMKIQHDLCLKELQMIQEKKLVLESQITESSYAAQELEEKIIQAVELLISFRKKRDELQIECDNAIKEVNQFRKLVEADTDEHCIKNFFSISFSDIIEATQNFDPTSKIGEGKLGSVYKGIIHNVKVAIKMLPACGSLSDSDFQHKAESLSRVRHPNLVTLMGICSESRSLTYEFLEKGNLEDHLAGRTKSRPLCWQHRIRIAVEICSALIFLHFNDPCLVHGNLTLSNILLDAKFISKISDLGVHLLVSHNENSSIDGKFCGKDDPEASDPECIDKGQLTVESDVYSFGIILLRLLTARPASGIVREVKCAWESGNLGSVLDCSAGEWPTERANLLAYLALRCCAEDPLNRPNMLLEVWPTIEPMRDVCTPCPDSNTSSQGSKSQRRIPPHFVCPIFQEVMEDPYIAADGYTYEGDAIKGWLYSGHDTSPMTNLKLDTCDLIPNYALYRAIQEWQQQS
Length790
PositionTail
OrganismNicotiana tabacum (Common tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.06
Grand average of hydropathy-0.405
Instability index43.69
Isoelectric point6.04
Molecular weight89086.56
Publications
PubMed=24807620

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12353
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.61|      10|      19|     100|     109|       1
---------------------------------------------------------------------------
  100-  109 (19.96/13.41)	IQGGKV.WLEM
  120-  130 (15.65/ 8.86)	IEQHKIqWLVM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     144.98|      46|      85|     466|     513|       2
---------------------------------------------------------------------------
  466-  513 (74.86/59.31)	C...GSLSDSDFQHKAESLSRVrhPNL.VTLMGICSESRSLTYEFLEKGNLE
  550-  599 (70.12/48.20)	ClvhGNLTLSNILLDAKFISKI..SDLgVHLLVSHNENSSIDGKFCGKDDPE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.79|      25|      86|      53|      77|       3
---------------------------------------------------------------------------
   53-   77 (45.73/30.13)	HPSNHLLSGKVSGTK.LKQHMVKACQ
  137-  162 (42.06/27.12)	HYSKQLSELKSSKAKfVCQHAPIHCQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     161.09|      42|      86|     173|     214|       4
---------------------------------------------------------------------------
  173-  214 (72.23/43.70)	HTR..SKNCSHLTSKESLSSPKDNGGTKLHDHADDGYEDLNISE
  233-  255 (27.12/11.95)	................SLLRSKNKCETHLHRST.....SLPILE
  260-  303 (61.74/36.32)	HTKpsSDERSRLDHAENSKKSAFEESVKRWRAEEDAMEAIHMAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      79.11|      19|      19|     391|     409|       5
---------------------------------------------------------------------------
  358-  375 (19.89/ 8.05)	ItESSYAAQELEE..KIIQA
  391-  409 (31.36/15.96)	I.ECDNAIKEVNQFRKLVEA
  413-  430 (27.86/13.55)	E.HCIKNFFSIS.FSDIIEA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12353 with Med32 domain of Kingdom Viridiplantae
Unable to open file!