<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12340

Description U-box domain-containing protein 35-like
SequenceAELEEEMKRLKLELKQTLDMYNETCRKQAREIDHLKSEEACKLEEAKEAQVAAHAMVEKEKQKCKAALEVARMAQQIAELESQKRKRVEQKFLHEAEEMKKAQDAFACSTIPYRRYSIDEIEAATNYFSNSKKIGEGGYGPVYKAYLDHTAVAIKVLRSDMSQGQTQFQQELDVLNRLRHPNVVLLLGACPEYGCLVYEYMENGSLEDRLFCKNRSPPIPWPARFRIAAEIAAALHFFHRSRPEPIVHRDLKPANILLDTNYKSKISDVGLARLVPASVSDSVTQFIMTSAAGTFCYIDPEYQQTGMLNPKSDIYSLGIMLLQIITARPPMGLTHHVERSIEKGNFDDILDPSVNDWPLEEALSFAKLALKCCELRRKDRPDLGSDILPELERLKDFALDYRRRGRFTSRPTSSQESLAVTEEVRRGISDNQSDKVP
Length437
PositionTail
OrganismNicotiana tabacum (Common tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.07
Grand average of hydropathy-0.523
Instability index51.52
Isoelectric point6.28
Molecular weight49817.36
Publications
PubMed=24807620

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12340
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     167.29|      47|      51|     290|     339|       1
---------------------------------------------------------------------------
  261-  290 (33.15/15.89)	...................NYKSKISDVG..LARLV....PASVSDS..VTQFIMTS
  291-  340 (79.08/56.92)	AAGTFCYI.DPEYQQTgmlNPKSDIYSLGIMLLQII....TARPPMG..LTHHVERS
  342-  393 (55.06/32.14)	EKGNFDDIlDPSVNDW....PLEEALSFAKLALKCCelrrKDRPDLGsdILPELER.
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12340 with Med32 domain of Kingdom Viridiplantae
Unable to open file!