<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12338

Description U-box domain-containing protein 52-like isoform X2
SequenceMFCKLRLIKREKMWLPNNKGSPANRRGNGTGVVAIAIDKDKGSQYAIKWATDNLVNRGQTLVLIHVVTKPASSSYGNCGGVHVVDGNLSAHGQNLEKQTKELFLTFHCFCTRKDIRCLDVILEDSDVTKALTEYVSSAAIQNLVLGASRHGFIRRLKVTDIPSTVSKGAPDFCTVYVISKSKISSVKNASRPAPMASPLYKQIQQLEEQVNSAGTTPTARTRAIHAGSVVDRSQRRSFISDESKKIGSPFDRRGILPSRIFSDLSEADTDLSFVSSGRPSTDHTSSMLFHDGMDSGRISQISTSSDSSFGSERLGPRGSELSSFNDFSSSSFETDDGEAEMRRLKMELQRTMDLYSTACKEALTAKQKSEELNVWRMEEEKRLEEARLAEEAAKLAAEKERDKCKVAMETAEAAQRLAELEAKRRVDAEMQALKEAEQKEKALMNLGQGDFRYRRYSIEEIEEATQFFTDSLKIGEGGYGPVYKCYLDHTPVAIKVLRPDAAQGRSQFQQEVEVLSRMRHPNMVLLLGACPEYGCLVYEYMANGSLEERLMRRGDKRSLSWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDHNYVSKISDVGLSRLVPPSTTEEVTQYRITSAAGTFCYIDPEYQQTGMLGVKSDVYSLGILLLQLVTAKPAMGITHYVSQCIETGEFKEALDPSVPDWPIEEALNFANLALQCAELRRKDRPDLGKVVLPELNRLRALTEENMGQLLIGGSAGPSPSHSQASISQEMSSDPQVRSGFSSKSVSNSSASQEKHSGTFNVVLVQGKEKC
Length806
PositionTail
OrganismNicotiana tabacum (Common tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.06
Grand average of hydropathy-0.431
Instability index49.73
Isoelectric point7.23
Molecular weight89332.31
Publications
PubMed=24807620

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12338
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     104.32|      28|      28|     320|     347|       1
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  261-  300 (19.19/ 8.21)	...FSDLSeadtdlsfvSSGRPSTDHTSSMlFHDGMDsgrisQ
  301-  320 (21.42/10.15)	ISTSSD............SSF....GSERL.GP......rgsE
  321-  347 (42.11/28.20)	LSSFNDFS.........SSSFETDDGEAEM.RRLKME......
  353-  371 (21.60/10.31)	.....DLY.........STACK....EALT.AKQKSE.....E
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      98.37|      27|      28|     386|     413|       2
---------------------------------------------------------------------------
  377-  407 (35.65/19.46)	MEEEKrleeARL.AEEAAKLAAEKERDKCKVA
  408-  432 (32.65/15.90)	METAE.......aAQRLAELEAKRRVDAEMQA
  706-  727 (30.06/13.89)	.........ANL.ALQCAELRRKDRPDLGKVV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.92|      19|      29|      26|      45|       4
---------------------------------------------------------------------------
   26-   45 (28.42/29.76)	RGNgTGVVAIAIDKDKGSQY
   57-   75 (32.51/27.00)	RGQ.TLVLIHVVTKPASSSY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.55|      19|      27|     433|     451|       6
---------------------------------------------------------------------------
  433-  451 (31.30/17.59)	LKEAEQKEKALMNLGQGDF
  461-  479 (32.25/18.31)	IEEATQFFTDSLKIGEGGY
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12338 with Med32 domain of Kingdom Viridiplantae
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