<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12326
Description |
Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MWTNVFKIGGLHQISWFQFLPHESDVSSLVDKSVKLDKKDAATWLVLSSHLQLQKEGFLSTWTNSFVGPWDPSQGLHNPDEKIKLWLFLPGQHSSVVEKAQSAVSKLRVLASGLWVAPGDSEEVAAALSQALRNCMERKLRGLSYVRYGDVFTRHHPFSQNEELFRKGQPVLEFIFSATEEAIFVHVIISAKHIRALSSGDIDKISEDTSNVSGERLPVIVSPHGMRGRLTGCCPADLVKQVYLSSCKFSASNGIVGLPCNVSRSGFQLKGQNCYVEVSLGCTTPGNNNIKESSRMLIYPPEAILVPVVQTACARSSLKRFWLQNWIGPSLSFTSSFMHCFDFNSDAKVNSTDGSWLDANITRSNRHYNSSSNSNSSSVSSVSTSSSDSDYKISGAGDLEADADSLMCRPSGLSSVDQSQNDNLKAGFKRSRTGISESFSQAGAVINPSTSDYASMEVNNSAITGGNDQIGLQWGWDDDDRGVGMDIQALLSEFGDFGDFFENDVLPFGEPPGTAESQALMFPAADSADVGSSPCPSMMDVQDQMLLPVGFPSFDSFNQPPPPASLDDSLGKQQEVIKSTAVANQVNNASAAIAGEFDHLIKAEALMTFAPEYGAVETPTGEKPHSIFRNPYLPKSREVDTSNSSSNSYVYSATPPLSPCFDACEEKSGVTVNLKTGAGKRDTSSIIQSKRYYTHIESGKQKNDGKLCGSDHSCATREAQVAQSPFYGFNSTNSVKSIHNKTQKANEVLLKADSFGQSMKTVLATEVECLMCQAFMCKIRHTLLSSSSYLPVGASRMSGSTIINQPQGEAVVTVDNLSSKSEMKKKEIIPVRIAGDIDGGLLDGTLNAPVGVWRSVGVSKGMKQPSSALEACHSVQHNSFIEESMLAYGLRQPLQELLDGMALLVQQATSLVDVALDADNNDGPYGWLALQEQWRRGFSCGPSMVHAGCGGVLASCHSLDIAGVELIDPLSADVQASFTLTLLQNDIKTAMKSAFGTMEGPLSVVDWCKGRSQSNDGGISGDGFSAESTASASECRDSSSTISFSVGEPISPSQSSAGGSSLKDGIRVDEASERRLSQDTCLSESEQLPGSRLRPTLSAVPYPAILVGYQDDWLKTSPSSLQLWEKAPFEPYAMPKHMSYYVVCPDINALTTAATDFFQQLGTVYETCKLGTHSPQCMGNEMEIDSGKNVSSGFVLIDCPQSMKIDSSSTSMLGSISDYFLSLSNGWDLESYLKSLSKVLRNLKLSSCMTMNPKEGSTGPCTVIYVVCPFPEPLAVLQTVVESSIAVGSVVLSSDKERRSTLQNQVGKALSYSAAVDESLSNVLTLSGFCIPKLVLQIVTVDAIFRVTSPALSELLVLKEIAFTVYNKARRISRGSSSDMVQSSSMSGRSHPVLMQMTSPVPGMWKDCVGPRSIGTSLQREAELDASLRSGSWDNWQTSRGGSLGCDPNRIGDFSIQDEVRYLFEPLYILAEPGSLDRGLSFPMSGNLMAESSKLLLDDGTSGNFMQSSASSGGGDTGPNTQSETSEPDGSGSAHQKSLPSLHCCYGWTEDWRWLVCIWTDSRGELLDNYIYPFGGISSRQDTKGLQSLFVQILQQGCQILQACPPESAIAKPRDFVIARIGSFFELECQEWQKALYAIGGSEVKKWSLQLRRSVPDGMSASSNGASLQQQEIGGMGQPSTRKQLIGGQGMVDNSRGLLQWVQSISFVSVSIDHSLQLMLQADIVSHGTSQSSGVLSQPGYLEGYTPVKSLGSTSTSYILIPSPNMRFLPPVGLQLRTCLTAESPPLAHLLHSKGCAIPLSTGFVVSKAVPTMRRDARGISKEEWPSVLSVGLVDYYGGSNIIQEKFLKGVGKVGGRGASSETRDVEVETHLILENIAAELHALSWMTVSPAYLERRSALPFHCDMVLRLRRLLHFADKEVSRQPEKTQV |
Length | 1930 |
Position | Kinase |
Organism | Nicotiana tabacum (Common tobacco) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae>
asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae>
Nicotiana.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.210 |
Instability index | 53.43 |
Isoelectric point | 5.42 |
Molecular weight | 208629.88 |
Publications | PubMed=24807620
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP12326
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 63.50| 20| 45| 416| 435| 1
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416- 435 (34.82/18.89) VDQSQ....ND..NLKAGFKRSRTGI
458- 483 (28.68/14.29) VNNSAitggNDqiGLQWGWDDDDRGV
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 353.80| 115| 124| 1417| 1539| 2
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1417- 1539 (181.11/124.28) SLQREAELDASLRsgsW..DNWQTSRGGSLGCDPNRIGDFSIQDEVRYLfEPLYI.LAEPGSLDRGLSFPMSGnlMAESSKLLLddGTSGNFMQ......SSA..SSGGGDTGP.NTQSETSEPDG.SGSAHQKSL
1541- 1668 (172.69/97.84) SLHCCYGWTEDWR...WlvCIWTDSRGELLDNYIYPFGGISSRQDTKGL.QSLFVqILQQGCQILQACPPESA..IAKPRDFVI..ARIGSFFElecqewQKAlyAIGGSEVKKwSLQLRRSVPDGmSASSNGASL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 68.66| 17| 126| 1128| 1145| 4
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1128- 1145 (33.51/25.78) PFEPYAMPKHMsYYVVCP
1253- 1269 (35.16/22.02) PKEGSTGPCTV.IYVVCP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 176.75| 40| 827| 376| 415| 6
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376- 415 (68.93/37.30) SSSVSSVSTS..SSDSDY..KISGAG.DLEADADSL..MCRPSGLSS
1005- 1036 (34.26/13.99) ...VDWCKGR..SQSNDG..GISGDGfSAESTASAS..ECR......
1038- 1059 (22.52/ 6.09) SSSTISFSVG..EPISPS..QSSAGG.....................
1202- 1247 (51.05/25.28) SMKIDSSSTSmlGSISDYflSLSNGW.DLESYLKSLskVLRNLKLSS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 331.71| 93| 1112| 563| 657| 7
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563- 657 (146.13/97.67) PASLDDSLGKQQEVIKSTAVANQVNNASaAIAGEFDHLIKaEALMTFAPEY....GAVETPTGEKPHSIFRNP.Y.LPKSREVDTSNSSSNSYVYSATPPL
1148- 1200 (46.20/22.14) .........................................NALTTAATDFfqqlGTVYETCKLGTHS....P.QcMGNEMEIDSGKNVSSGFVLIDCP..
1679- 1766 (139.37/85.21) PSTRKQLIGGQGMVDNSRGLLQWVQSIS.FVSVSIDHSLQ...LMLQA.......DIVSHGTSQS.SGVLSQPgY.LEGYTPVKSLGSTSTSYILIPSPNM
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 146.38| 39| 1112| 180| 218| 8
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180- 218 (64.85/41.12) EEAIF......V.H...........VIISA.KHIRALSSGDIDK.......ISEDTSNV...SGERLP
1282- 1332 (40.00/22.06) ESSIA......VgS...........VVLSSdKERRSTLQNQVGKalsysaaVDESLSNVltlSGFCIP
1341- 1392 (41.52/23.23) VDAIFrvtspaL.SellvlkeiaftVYNKA.RRISRGSSSDMVQ...........SSSM...SGRSHP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 170.28| 44| 78| 831| 875| 9
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831- 875 (73.31/49.37) VRIAGDIDGGLLDGTLN..APVGVWRSvGVSKGMKQPSSALEACHSV
881- 910 (30.02/13.62) ......IEESMLAYGLR..QPLQELLD.GMALLVQQATS........
912- 952 (66.95/40.46) VDVALDADNN..DGPYGwlALQEQWRR.GFSCG...PSMVHAGCGGV
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