<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12320

Description U-box domain-containing protein 52-like isoform X3
SequenceMSKLNHLLLNPLLIPHLIQCYDVVLEDVDVVKAIVEYVNRTAIEVLILGAAAKGGLLRRFKVKDIPGNVVKGVPDFCTVYVISKNGKISATRSASRLAPFIHPLRHQFMQQGNAKSNTTEDSLNTPSRGSLSGIPKPVSDLPMSNLQSDTLNMKSPFTHRKGPNGKPYEISQPDTDISFVSSGRPSIDNMFPSFADNYDSGATPPRLSGFSDFEAQNFEPIPLGRRSLDIMPSELSFLSMEGDRASFSSTPDDVAAEMRRLKLELKQTMEMYSTACKEALTAQQKAMELQRWKTEEQRRLEEARFAEEAALALAEKEKAKSRAALEHAEAAQRLAELEAQKRINAEMKALKEAEERNKVLNKLSNSDFRYRRYTIEEIETATDYFAQANKIGEGGYGPVYKCYMDHTPVAVKVLRPDAAHGRQQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMSNGSLEDRLFQRGKTPPLSWQQRFRIAAEIGAGLLFLHQSKPEPIVHRDLKPANILLDRNFVSKISDVGLARLVPPSVADCVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDVYSLGIIFLQILTAKPPMGLTHHVERAIEKGTFNEMLDSSVPDWPLDEALNLAKLSLKCSELRRKDRPDLSKVIMPELERLRTLGEENPCQSPLYSSGSSSNHSQAFVSQASQHE
Length685
PositionTail
OrganismNicotiana tabacum (Common tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.07
Grand average of hydropathy-0.391
Instability index45.66
Isoelectric point6.60
Molecular weight76557.56
Publications
PubMed=24807620

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12320
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.96|      13|     364|      74|      86|       1
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   74-   86 (26.14/16.81)	PDF.CTVYVISKNG
  448-  461 (22.82/13.84)	PEYgCLVYEFMSNG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.40|      13|     364|     248|     264|       2
---------------------------------------------------------------------------
  229-  241 (22.55/15.19)	DIMPSELSFLSME
  252-  264 (20.85/ 7.09)	DDVAAEMRRLKLE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     205.80|      67|      91|     504|     575|       5
---------------------------------------------------------------------------
  504-  575 (104.08/81.87)	VHRDLKPA..NILLDRNFVSKISD..VGLARLvppSVaDCvTQYRMTSTAGTFCYIDPEYQQTGMLG....IKSDVYSLG
  594-  668 (101.72/63.72)	VERAIEKGtfNEMLDSSVPDWPLDeaLNLAKL...SL.KC.SELRRKDRPDLSKVIMPELERLRTLGeenpCQSPLYSSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.23|      17|      17|     181|     197|       6
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  181-  197 (32.21/22.36)	SSGRPSIDNMFPSF.ADN
  200-  217 (27.02/17.47)	SGATPPRLSGFSDFeAQN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      66.91|      19|      72|     298|     316|       7
---------------------------------------------------------------------------
  277-  291 (17.80/ 9.57)	...KEALTAQQKAMEL.QR
  298-  316 (30.56/21.85)	RRLEEARFAEEAALALAEK
  323-  336 (18.56/10.29)	AALEHA....EAAQRLAE.
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12320 with Med32 domain of Kingdom Viridiplantae
Unable to open file!