<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12319

Description U-box domain-containing protein 52-like isoform X1
SequenceMRPPPTAGNHGPPLNKLIAVAIDKDRGSQVALKWAIDNLLARGQTVILIHVKVKPSASQPPSHTTSRLNQMSDASTDGSGMSELDPQLKELFLPFRVFCTRKDIQCYDVVLEDVDVVKAIVEYVNRTAIEVLILGAAAKGGLLRRFKVKDIPGNVVKGVPDFCTVYVISKNGKISATRSASRLAPFIHPLRHQFMQQGNAKSNTTEDSLNTPSRGSLSGIPKPVSDLPMSNLQSDTLNMKSPFTHRKGPNGKPYEISQPDTDISFVSSGRPSIDNMFPSFADNYDSGATPPRLSGFSDFEAQNFEPIPLGRRSLDIMPSELSFLSMEGDRASFSSTPDDVAAEMRRLKLELKQTMEMYSTACKEALTAQQKAMELQRWKTEEQRRLEEARFAEEAALALAEKEKAKSRAALEHAEAAQRLAELEAQKRINAEMKALKEAEERNKVLNKLSNSDFRYRRYTIEEIETATDYFAQANKIGEGGYGPVYKCYMDHTPVAVKVLRPDAAHGRQQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMSNGSLEDRLFQRGKTPPLSWQQRFRIAAEIGAGLLFLHQSKPEPIVHRDLKPANILLDRNFVSKISDVGLARLVPPSVADCVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDVYSLGIIFLQILTAKPPMGLTHHVERAIEKGTFNEMLDSSVPDWPLDEALNLAKLSLKCSELRRKDRPDLSKVIMPELERLRTLGEENPCQSPLYSSGSSSNHSQAFVSQASQHE
Length771
PositionTail
OrganismNicotiana tabacum (Common tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.07
Grand average of hydropathy-0.410
Instability index45.45
Isoelectric point7.24
Molecular weight85817.95
Publications
PubMed=24807620

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12319
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.96|      13|     364|     160|     172|       1
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  160-  172 (26.14/18.07)	PDF.CTVYVISKNG
  534-  547 (22.82/14.88)	PEYgCLVYEFMSNG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.40|      13|     364|     334|     350|       2
---------------------------------------------------------------------------
  315-  327 (22.55/16.65)	DIMPSELSFLSME
  338-  350 (20.85/ 7.71)	DDVAAEMRRLKLE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     205.80|      67|      92|     590|     661|       4
---------------------------------------------------------------------------
  590-  661 (104.08/86.25)	VHRDLKPA..NILLDRNFVSKISD..VGLARLvppSVaDCvTQYRMTSTAGTFCYIDPEYQQTGMLG....IKSDVYSLG
  680-  754 (101.72/67.06)	VERAIEKGtfNEMLDSSVPDWPLDeaLNLAKL...SL.KC.SELRRKDRPDLSKVIMPELERLRTLGeenpCQSPLYSSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      66.91|      19|      73|     384|     402|       5
---------------------------------------------------------------------------
  363-  377 (17.80/ 8.58)	...KEALTAQQKAMEL.QR
  384-  402 (30.56/19.61)	RRLEEARFAEEAALALAEK
  409-  422 (18.56/ 9.24)	AALEHA....EAAQRLAE.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      64.79|      13|      75|     207|     219|       7
---------------------------------------------------------------------------
  207-  219 (25.31/13.32)	DSLNTPS....RGSLSG
  235-  251 (18.03/ 7.48)	DTLNMKSpfthRKGPNG
  285-  295 (21.44/10.22)	DSGATPP....R..LSG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12319 with Med32 domain of Kingdom Viridiplantae
Unable to open file!