<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12318

Description U-box domain-containing protein 52-like isoform X2
SequenceMRPPPTAGNHGPPLNKLIAVAIDKDRGSQVALKWAIDNLLARGQTVILIHVKVKPSASQPPSHTTSRLNQMSDASTDGSGMSELDPQLKELFLPFRVFCTRKDIQCYDVVLEDVDVVKAIVEYVNRTAIEVLILGAAAKGGLLRFKVKDIPGNVVKGVPDFCTVYVISKNGKISATRSASRLAPFIHPLRHQFMQQGNAKSNTTEDSLNTPSRGSLSGIPKPVSDLPMSNLQSDTLNMKSPFTHRKGPNGKPYEISQPDTDISFVSSGRPSIDNMFPSFADNYDSGATPPRLSGFSDFEAQNFEPIPLGRRSLDIMPSELSFLSMEGDRASFSSTPDDVAAEMRRLKLELKQTMEMYSTACKEALTAQQKAMELQRWKTEEQRRLEEARFAEEAALALAEKEKAKSRAALEHAEAAQRLAELEAQKRINAEMKALKEAEERNKVLNKLSNSDFRYRRYTIEEIETATDYFAQANKIGEGGYGPVYKCYMDHTPVAVKVLRPDAAHGRQQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMSNGSLEDRLFQRGKTPPLSWQQRFRIAAEIGAGLLFLHQSKPEPIVHRDLKPANILLDRNFVSKISDVGLARLVPPSVADCVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDVYSLGIIFLQILTAKPPMGLTHHVERAIEKGTFNEMLDSSVPDWPLDEALNLAKLSLKCSELRRKDRPDLSKVIMPELERLRTLGEENPCQSPLYSSGSSSNHSQAFVSQASQHE
Length770
PositionTail
OrganismNicotiana tabacum (Common tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.07
Grand average of hydropathy-0.405
Instability index44.75
Isoelectric point6.98
Molecular weight85661.76
Publications
PubMed=24807620

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12318
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.77|      12|      27|     201|     212|       1
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  201-  212 (21.53/12.15)	SNTTEDSLNTPS
  229-  240 (21.24/11.91)	SNLQSDTLNMKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.49|      13|      23|     362|     374|       2
---------------------------------------------------------------------------
  362-  374 (20.78/13.19)	KEALTAQQKAMEL
  386-  398 (18.71/11.17)	EEARFAEEAALAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.18|      21|      91|     640|     660|       4
---------------------------------------------------------------------------
  640-  660 (39.12/26.00)	IDPEYQQTGMLG....IKSDVYSLG
  729-  753 (34.06/21.70)	IMPELERLRTLGeenpCQSPLYSSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.23|      17|      17|     266|     282|       7
---------------------------------------------------------------------------
  266-  282 (32.21/21.41)	SSGRPSIDNMFPSF.ADN
  285-  302 (27.02/16.68)	SGATPPRLSGFSDFeAQN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      83.61|      23|     394|     112|     136|       8
---------------------------------------------------------------------------
  112-  136 (31.96/27.99)	EDVDVVKAIveYVNRTAIEVLILGA
  488-  501 (16.75/ 7.08)	...........YMDHTPVAVKVLRP
  512-  531 (34.90/23.63)	QEVEVLSCI.....RHPNMVLLLGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.79|      13|     432|     241|     259|       9
---------------------------------------------------------------------------
  213-  225 (23.55/10.37)	RGSLSGIPKPVS..D
  245-  259 (20.24/11.27)	RKGPNGKPYEISqpD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12318 with Med32 domain of Kingdom Viridiplantae
Unable to open file!