<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12314

Description U-box domain-containing protein 35-like isoform X4
SequenceMFGSRTQQIVENGVVQGSNRGLSDQDTHKVFTPFRAYSARKGIAVKEVVIEDIEVSKGLLDYINNHRVTNIVLGASSRSALSRKFWSHDVPTIINKSAPDFCTVYVISKGKQQSVRPAAKPFASSLSATLPSSQAWSAARLSNYSESSDVSRSVYTRPEQNIVGSEMMKPKIGPSNASMDNLDVHTRDTRNSYSRSSPSDDRGLFAPLSHGSVDITAQNLDFTQVSVKENCSSSSSWEAEMNRLKLELRQTLNMYNTACKEAVSANQTAKELHQWKMEEASRFKQARISEEAALAIAEMEKAKGRAAIEAAQKAQKLAEIEAKRRKYAELKAKRVTEEKNLALNDLSRSDLCYRKYTIEEIEAATKNFSNSEKIGEGGYGPVYKGKLDHTPVAIKVLRSDAAQGMKQFKQEVQVLGLMRHPNMVLLLGACPEYGCLVYEFMNNGSLEDRLFRKGNTPPIPWEIRFKIAAEIATGLLFLHQAKPEPLVHRDLKPANILLDSNYSCKISDVGLARLVPPSVADCVTQYHMTSAAGTFCYIDPEYQQTGKLGTKSDIYSLGVMLLQIITARPPMGLTHHVERAIENGTFADILDPTVPNWPMEETLNYAKLSLKCAELRKKDRPDLGSVILPELNKLKELGMNSKPSIDS
Length647
PositionTail
OrganismNicotiana tabacum (Common tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.07
Grand average of hydropathy-0.423
Instability index42.56
Isoelectric point8.81
Molecular weight71817.06
Publications
PubMed=24807620

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12314
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.88|      25|      36|     173|     197|       1
---------------------------------------------------------------------------
  173-  197 (44.57/30.38)	GPSNASMDNLDVHTRDTRNSYSRSS
  211-  235 (40.31/26.81)	GSVDITAQNLDFTQVSVKENCSSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.71|      40|      47|     253|     299|       2
---------------------------------------------------------------------------
  260-  299 (65.19/65.48)	KEAVSANQTAKELH..QWKMEEASRFKQARISEEAALAIAEM
  305-  346 (56.52/37.36)	RAAIEAAQKAQKLAeiEAKRRKYAELKAKRVTEEKNLALNDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.52|      29|      36|       2|      30|       3
---------------------------------------------------------------------------
    2-   30 (49.28/36.96)	FGSRTQQIVENGVVQG..SNRGLSDQ.DTHKV
   37-   68 (38.24/27.07)	YSARKGIAVKEVVIEDieVSKGLLDYiNNHRV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.46|      36|      38|      80|     117|       4
---------------------------------------------------------------------------
   78-  115 (54.29/47.63)	RSAlSRKF...WSHDVPTIINKSAPDFcTVYVISKGKQQSV
  116-  154 (56.17/38.19)	RPA.AKPFassLSATLPSSQAWSAARL.SNYSESSDVSRSV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12314 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) YTRPEQNIVGSEMMKPKIGPSNASMDNLDVHTRDTRNSYSRSSPSDDRGLFAPL
155
208










Molecular Recognition Features






MoRF SequenceStartStop




NANANA