<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12313

Description U-box domain-containing protein 35-like isoform X1
SequenceMPLSFSSDDCSHPTIVAVDKDKHSASAVKWAVDHLVISNPTLVLVHVRIKNSTNQNGVVQGSNRGLSDQDTHKVFTPFRAYSARKGIAVKEVVIEDIEVSKGLLDYINNHRVTNIVLGASSRSALSRKFWSHDVPTIINKSAPDFCTVYVISKGKQQSVRPAAKPFASSLSATLPSSQAWSAARLSNYSESSDVSRSVYTRPEQNIVGSEMMKPKIGPSNASMDNLDVHTRDTRNSYSRSSPSDDRGLFAPLSHGSVDITAQNLDFTQVSVKENCSSSSSWEAEMNRLKLELRQTLNMYNTACKEAVSANQTAKELHQWKMEEASRFKQARISEEAALAIAEMEKAKGRAAIEAAQKAQKLAEIEAKRRKYAELKAKRVTEEKNLALNDLSRSDLCYRKYTIEEIEAATKNFSNSEKIGEGGYGPVYKGKLDHTPVAIKVLRSDAAQGMKQFKQEVQVLGLMRHPNMVLLLGACPEYGCLVYEFMNNGSLEDRLFRKGNTPPIPWEIRFKIAAEIATGLLFLHQAKPEPLVHRDLKPANILLDSNYSCKISDVGLARLVPPSVADCVTQYHMTSAAGTFCYIDPEYQQTGKLGTKSDIYSLGVMLLQIITARPPMGLTHHVERAIENGTFADILDPTVPNWPMEETLNYAKLSLKCAELRKKDRPDLGSVILPELNKLKELGMNSKPSIDS
Length691
PositionTail
OrganismNicotiana tabacum (Common tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.06
Grand average of hydropathy-0.394
Instability index39.48
Isoelectric point8.77
Molecular weight76531.37
Publications
PubMed=24807620

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12313
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     100.17|      25|      36|     217|     241|       1
---------------------------------------------------------------------------
  181-  192 (15.29/ 6.45)	..SAARLSN...........YSESS
  217-  241 (44.57/33.62)	GPSNASMDNLDVHTRDTRNSYSRSS
  255-  279 (40.31/29.66)	GSVDITAQNLDFTQVSVKENCSSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.02|      25|      29|     321|     347|       3
---------------------------------------------------------------------------
  321-  345 (39.82/27.24)	MEEASR................FKQARISEEAALAIAEMEK
  352-  392 (28.20/11.96)	IEAAQKaqklaeieakrrkyaeLKAKRVTEEKNLALNDLSR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12313 with Med32 domain of Kingdom Viridiplantae
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