<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12293

Description U-box domain-containing protein 35-like isoform X1
SequenceMFCKLRLIKREKMWLPNNKGSPANRRGNGTGVVAIAIDKDKGSQYAIKWATDNLVNRGQTLVLVHVVTKPTSSSYGNCGGVHVVDGNLSAHGQNLEKQTKELFLTFHCFCTRKDVRCLDVILEDSDVTKALTEYVSSAAIQNLVLGASRHGFIRRLKVTDIPSTVSKGAPDFCTVYVISKSKISSVKNASRPAPMASPLYKQIQQLEEQVNSGGITPTARTRAIHAGSVVDRSQRRSFISDESKKIGFGSRSPFDRRGILPSRIFSDLSEADTDLSFVSSGRPSTDHTSSMLYHDGMDSGRISQISTSSDSSFGSERLGARGSELSSFNDFSSSSFETDDGEAEMRRLKMELQRTMDLYSTACKEALTAKQKSEELNVWRMEEEKRLEEARLAEEAAKLAAEKERDKCKVAMETAEAAQRLAELEAKRRVDAEMQALKEAEQKEKAFMNLGQGDFRYRRYSIEEIEEATHFFTDSLKIGEGGYGPVYKCYLDHTPVAIKILRPDAAQGRSQFQQEVEVLSRMRHPNMVLLLGACPEYGCLVYEYMANGSLEERLMRCGDKRSLSWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDHNYVSKISDVGLSRLVPPSTTEEVTQYRITSAAGTFCYIDPEYQQTGMLGVKSDVYSFGILLLQLVTAKPAMGITHYVSQCIETGEFKEVLDPSVPDWPIEEALTFAKLALQCAELRRKDRPDLGKVVLPELNRLRALTEENMGQLLIGGSASPSPSHSQASISQEISSEPQVHSGFSTKSVSNSSASQEKHSGSGDE
Length801
PositionTail
OrganismNicotiana tabacum (Common tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.07
Grand average of hydropathy-0.434
Instability index50.59
Isoelectric point6.69
Molecular weight88799.52
Publications
PubMed=24807620

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12293
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     123.16|      28|      28|     240|     267|       1
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  240-  267 (49.20/25.91)	SDESKKIGFGS..RSPFDRR.......GILPSRIFSD
  269-  304 (33.01/15.22)	SEADTDLSFVSsgRPSTDHTssmlyhdGMDSGRI.SQ
  305-  330 (40.95/20.46)	ISTSSDSSFGS..ERLGARG.......SELSS..FND
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.19|      24|      28|     390|     417|       2
---------------------------------------------------------------------------
  393-  416 (37.95/30.62)	AEEAAKLAAEKERDKCKVAMETAE
  418-  441 (37.24/21.01)	AQRLAELEAKRRVDAEMQALKEAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.40|      25|     256|      72|     108|       3
---------------------------------------------------------------------------
   43-   70 (39.56/25.26)	SQY....AIKWATDNLVNRGQTLvlvHVVTKP
   73-  101 (37.84/49.52)	SSYgncgGVHVVDGNLSAHGQNL...EKQTKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     101.78|      23|     528|     191|     213|       4
---------------------------------------------------------------------------
  191-  213 (41.22/31.06)	RP..APMAS..PLYKQIQQLEEQVNSG
  724-  747 (28.85/19.22)	RPdlGKVVL..PELNRLRALTEE.NMG
  756-  779 (31.70/21.95)	SP..SPSHSqaSISQEISS.EPQVHSG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12293 with Med32 domain of Kingdom Viridiplantae
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