<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12292

Description U-box domain-containing protein 35-like isoform X3
SequenceMFCKLRLIKREKMWLPNNKGSPANRRGNGTGVVAIAIDKDKGSQYAIKWATDNLVNRGQTLVLVHVVTKPTSSSYGNCGGVHVVDGNLSAHGQNLEKQTKELFLTFHCFCTRKDVRCLDVILEDSDVTKALTEYVSSAAIQNLVLGASRHGFIRRLKVTDIPSTVSKGAPDFCTVYVISKSKISSVKNASRPAPMASPLYKQIQQLEEQVNSGGITPTARTRAIHAGSVVDRSQRRSFISDESKKIGSGRPSTDHTSSMLYHDGMDSGRISQISTSSDSSFGSERLGARGSELSSFNDFSSSSFETDDGEAEMRRLKMELQRTMDLYSTACKEALTAKQKSEELNVWRMEEEKRLEEARLAEEAAKLAAEKERDKCKVAMETAEAAQRLAELEAKRRVDAEMQALKEAEQKEKAFMNLGQGDFRYRRYSIEEIEEATHFFTDSLKIGEGGYGPVYKCYLDHTPVAIKILRPDAAQGRSQFQQEVEVLSRMRHPNMVLLLGACPEYGCLVYEYMANGSLEERLMRCGDKRSLSWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDHNYVSKISDVGLSRLVPPSTTEEVTQYRITSAAGTFCYIDPEYQQTGMLGVKSDVYSFGILLLQLVTAKPAMGITHYVSQCIETGEFKEVLDPSVPDWPIEEALTFAKLALQCAELRRKDRPDLGKVVLPELNRLRALTEENMGQLLIGGSASPSPSHSQASISQEISSEPQVHSGFSTKSVSNSSASQEKHSGSGDE
Length769
PositionTail
OrganismNicotiana tabacum (Common tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.06
Grand average of hydropathy-0.441
Instability index48.85
Isoelectric point6.83
Molecular weight85241.64
Publications
PubMed=24807620

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12292
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      77.99|      23|      28|     359|     385|       1
---------------------------------------------------------------------------
  335-  354 (17.60/ 6.07)	........LTAKQKSEELNVwRMEEEKR
  359-  385 (31.15/28.28)	RLAEeaakLAAEKERDKCKV.AMETAEA
  388-  409 (29.24/16.98)	RLAE....LEAKRRVDAEMQ.ALKEAE.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     160.13|      44|     496|     247|     292|       2
---------------------------------------------------------------------------
  213-  243 (31.67/ 9.98)	GGITP.TARTRAI..HAGsvVDrSQRRSFISDE............S..............
  247-  291 (74.95/39.92)	GSGRPSTDHTSSMLyHDG..MD.SGRISQISTS............SDSSFGSERLGARGS
  721-  768 (53.51/22.98)	GSASPSPSHSQASI.........SQE...ISSEpqvhsgfstksvSNSSASQEKHSGSGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.05|      19|      29|      26|      45|       3
---------------------------------------------------------------------------
   26-   45 (28.41/22.12)	RGNgTGVVAIAIDKDKGSQY
   57-   75 (32.63/20.15)	RGQ.TLVLVHVVTKPTSSSY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.30|      13|      27|     416|     428|       4
---------------------------------------------------------------------------
  416-  428 (25.75/15.25)	MNLGQGDF..RYRRY
  444-  458 (20.55/10.82)	LKIGEGGYgpVYKCY
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12292 with Med32 domain of Kingdom Viridiplantae
Unable to open file!