<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12288

Description pre-mRNA-processing protein 40A-like isoform X3
SequenceMPDEVKLARQSMKVDLVKGLGKERDSISHASDFGSISGVKTSPLSANGSPVSAQGAMSSPIAVAPVSNLPTIVASESSSLSGNISSLTIGAVEMQNSLEPASPAVATSEKNGTAVTLENSVATPVTSSEFPSAQDSVVYEDGVSLENTEEVKKDATVSETGSATPSEEKTVEPGPLVYESKAEAKSAFKILLESANIGSDWTWDQAMRAIINDRRYGALKSLGERKQAFNEYLSHKKKLEAEERRIKQKKAREDFRIMLEECKELAPSTRWSKAISIFEHDERFKAVERAKDREDLFEDYMEELEKKERARALEEQKRNRVEYLEFLKSCDFIKASSQWRKVQDRLEDDERCSCLEKIDRLEIFQEYIRDLEREEEEHRKLRMDEMRKAERKNRDEFRKLMEEHVAAGILNAKTNWRDYCIKVKDLPAYLAVSSNTSGPKAKDLFQDVFDELEKQFVFEELLERAREREEKEAKRRKRLADEFYELLHTSKEITASSKWEDCKSIFGDRIMGEESFLLEIFDKFISELKEKAKEKERKRQEDKARKEKERKDREKKKEKHRRDKDRGDKSRKERERTKKDGTDSEKADTYSFEEIKRLGSDRDKKHRKRHMSSFDDNENEKDHSRNSYRHDNDHKKSKQVDQHVWSSEVNSEGQHKKQKRDHRSGSLRDGDNEDHKDGEFGEDGEVR
Length687
PositionUnknown
OrganismNicotiana tabacum (Common tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.06
Grand average of hydropathy-1.156
Instability index47.63
Isoelectric point6.06
Molecular weight79508.60
Publications
PubMed=24807620

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12288
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     228.41|      40|      40|     305|     344|       1
---------------------------------------------------------------------------
  220-  255 (36.41/17.06)	KSLGER...K.QAFN..E.YLSHKK.......KLEAEERRIkQ.K.........................K....A.REDF
  256-  284 (34.51/15.74)	RIM....................LEEC..KELAPSTRWSKA.I.S.......................ifE....H.DERF
  311-  352 (63.08/35.73)	RALEEQ...K.RNRV..E.YLEFLKSC..DFIKASSQWRKV.Q.D.......................rlE....D.DERC
  353-  391 (31.38/13.55)	SCLE.....K.IDRL..EiFQEYIR....DLEREEEEHRKL.RmD.......................emR....K.AER.
  466-  536 (31.34/13.52)	REREEKeakR.RKRLadE.FYELLHTS..KEITASSKWEDC.K.SifgdrimgeesflleifdkfiselkE....KaKEKE
  537-  575 (31.70/13.76)	RKRQED...KaRKEK..E.........rkDREKKKEKHRRD.K.D.........................RgdksR.KERE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.94|      21|      32|     602|     630|       2
---------------------------------------------------------------------------
  602-  623 (34.68/24.86)	RDKKHRKRHMSSFDDNeNEKDH
  635-  655 (35.26/10.35)	KKSKQVDQHVWSSEVN.SEGQH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.23|      12|      17|      66|      80|       3
---------------------------------------------------------------------------
   66-   79 (14.84/10.35)	VSnlPTIVASESSS
  101-  112 (18.39/ 7.71)	AS..PAVATSEKNG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.73|      19|      38|     118|     140|       4
---------------------------------------------------------------------------
  118-  136 (33.12/15.52)	ENS..VATPVTSSEFPSAQDS
  146-  166 (26.60/16.17)	ENTeeVKKDATVSETGSATPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.89|      10|      17|      35|      44|       5
---------------------------------------------------------------------------
   35-   44 (17.02/11.00)	SISGVKTSPL
   52-   61 (17.87/11.90)	SAQGAMSSPI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12288 with Med35 domain of Kingdom Viridiplantae
Unable to open file!