<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12285

Description pre-mRNA-processing protein 40A-like isoform X2
SequenceMPDEVKLARQSMKVDLVKGLGKERDSISHASDFGSISGVKTSPLSANGSPVSAQGAMSSPIAVAPVSNLPTIVASESSSLSGNISSLTIGAVEMQNSLEPASPAVATSEKNGTAVTLENSVATPVTSSEFPSAQDSVVYEDGVSLENTEEVKKDATVSETGSATPSEEKTVEPGPLVYESKAEAKSAFKILLESANIGSDWTWDQAMRAIINDRRYGALKSLGERKQAFNEYLSHKKKLEAEERRIKQKKAREDFRIMLEECKELAPSTRWSKAISIFEHDERFKAVERAKDREDLFEDYMEELEKKERARALEEQKRNRVEYLEFLKSCDFIKASSQWRKVQDRLEDDERCSCLEKIDRLEIFQEYIRDLEREEEEHRKLRMDEMRKAERKNRDEFRKLMEEHVAAGILNAKTNWRDYCIKVKDLPAYLAVSSNTSGPKAKDLFQDVFDELEKQIGLTSTWTLEDFKVAISKDISSPPISDTNLKFVFEELLERAREREEKEAKRRKRLADEFYELLHTSKEITASSKWEDCKSIFGDRIMGEESFLLEIFDKFISELKEKAKEKERKRQEDKARKEKERKDREKKKEKHRRDKDRGDKSRKERERTKKDGTDSEKADTYSFEEIKRLGSDRDKKHRKRHMSSFDDNENEKDHSRNSYRHDNDHKKSKQVDQHVWSSEVNSEGQHKKQKRDHRSGSLRDGDNEDHKDGEFGEDGEVR
Length718
PositionUnknown
OrganismNicotiana tabacum (Common tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.06
Grand average of hydropathy-1.109
Instability index46.14
Isoelectric point6.00
Molecular weight82868.37
Publications
PubMed=24807620

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12285
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.38|      36|      39|     628|     666|       1
---------------------------------------------------------------------------
  628-  664 (59.07/26.27)	RLGSDRDKKHRKRHMSSFDDNENEkDHSRNSYRHDND
  681-  716 (56.31/17.91)	NSEGQHKKQKRDHRSGSLRDGDNE.DHKDGEFGEDGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.01|      34|      39|      40|      78|       2
---------------------------------------------------------------------------
   43-   78 (50.72/54.02)	PLSANGSPVSAqGAM........SSPiAVAPVSNLPTIVASESS
   79-  120 (49.29/32.52)	SLSGNISSLTI.GAVemqnslepASP.AVATSEKNGTAVTLENS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     462.40|      65|      65|     242|     306|       3
---------------------------------------------------------------------------
  167-  233 (61.18/24.12)	.........EEK.TV..EpgplvyesKAEAK.SAFKIL.L.E...SANIG.SDWTWDQAMRAIIN.D.RRYGAL...K..SL.GERKQAFNEYL
  237-  301 (104.12/45.42)	KKL.EA...EER.RI..K........QKKAR.EDFRIM.LEE...CKELA.PSTRWSKAISIFEH.D.ERFKAV...E..RA.KDREDLFEDYM
  302-  368 (83.17/35.03)	EEL.EK...KERaRAleE........QKRNR.VEYLEF.LKS...CDFIK.ASSQWRKVQDRLED.D.ERCSCL...E..KI..DRLEIFQEYI
  369-  449 (59.74/23.41)	RDL.EReeeEHR.KL..R.mdemrkaERKNR.DEFRKL.MEEhvaAGILN.AKTNW.RDYCIKVK.DlPAYLAVssnT..SG.PKAKDLFQDVF
  450-  515 (57.00/22.05)	DEL.EK.......QIglT........STWTL.EDFKVA.I.....SKDISsPPISDTNLKFVFEElL.ERARER...EekEA.KRRKRLADEFY
  516-  556 (51.70/19.42)	E.....................................lLHT...SKEIT.ASSKWEDCKSIF...G.DRIMGE...E..SF...LLEIFDKFI
  557-  614 (45.48/16.34)	SELkEKakeKER.KR..Q........EDKARkEKERKD.REK...KKE.K.H..RRDKD....RG.D.KSRKER...E..RTkKDGTD......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.90|      16|      31|     121|     136|       4
---------------------------------------------------------------------------
  121-  136 (28.06/19.24)	VATPVTSSEFPSAQDS
  151-  166 (26.84/18.08)	VKKDATVSETGSATPS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12285 with Med35 domain of Kingdom Viridiplantae
Unable to open file!