<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12267

Description U-box domain-containing protein 32-like isoform X1
SequenceMSEGFGVINAEGICDGENTVFVAVGKNVKEGKSILSWALKSFSVRRICILHVHQPNHLLDGKVSGTKLKQHMVKACQELERQKLHKLLNQHLLFLSQAGIQGGKVWLEMNNVEKGIIHIIEQHKIQWLVMGAAAETHYSKQLSELKSSKAKFVCQHAPIHCQIWFTCSSYLIHTRSKNCSHLTSKESLSSPKDNGGTKLHDHADDGYEDLNISEDASMSADKMVNVEIKGNYSFLRSKNKCEAHLHRSTSLPILEEGRFHAKPSSDERSRLEHAMMDAENSKKRAFEESVKRWRAEEDAMEAIHMAEVSYKLSKEEEGRRKEKEEILAKQKEEVERMKIQYDLCLKELQMIQEKKLVLESQITESSYAAQELEEKIIQAVELLISFRKKRDELQIECDNAIKEVNQFRKLVEADTDEHCIKNFFSISFSDIIEATQNFDPTSKIGEGKLGSVYKGIIHNVKVAIKMLPACGSLSDSDFQHKAESLSRVRHPNLVTLMGICSESRSLTYEFLEKGNLEDHLAGRTKSRPLCWQHRIRIAVEICSALIFLHASDPCLVHGNLTLSNILLDAKFISKISDLGVHLLVSHNENSSIDGIFCCKDDPEASDPECIDKGQLTVESDVYSFGIILLRLLTARPASGIVREVKCAWESGNLGSVLDCSAGEWPTERANLLAYLALRCCANDPLNRPNMLLDVWPTIEPMRDVSTPCPDSNTSSQGSKGQRRIPPHFVCPIFQVRLRYMISVLLLQILALVS
Length753
PositionTail
OrganismNicotiana tabacum (Common tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.06
Grand average of hydropathy-0.320
Instability index45.15
Isoelectric point6.54
Molecular weight84849.46
Publications
PubMed=24807620

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12267
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.61|      10|      19|     100|     109|       1
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  100-  109 (19.96/11.44)	IQGGKV.WLEM
  120-  130 (15.65/ 7.60)	IEQHKIqWLVM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.28|      23|      23|     255|     277|       4
---------------------------------------------------------------------------
  255-  277 (41.59/25.20)	EEGRFHAKPSSDERSRLEHAMMD
  279-  301 (37.70/22.20)	ENSKKRAFEESVKRWRAEEDAME
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     237.27|      60|      78|     526|     588|       5
---------------------------------------------------------------------------
  458-  502 (58.12/33.42)	........HNVKVAIKM.......LPA...C...GSLSDSDFQHKAESLSRVrhPNL.VTLMGICSE
  526-  588 (96.63/68.41)	SRPLCW.QHRIRIAVEICS.ALIFLHAsdpCLVHGNLTLSNILLDAKFISKI..SDLGVHLLVSHNE
  605-  663 (82.51/50.49)	SDPECIdKGQLTVESDVYSfGIILLR.....LLTAR.PASGIVREVKCAWES..GNLGSVLDCSAGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.56|      26|      64|      65|      91|       7
---------------------------------------------------------------------------
   65-   91 (41.22/29.15)	GTKLKQHMVKACQELERQKlHKLLNQH
  131-  156 (43.34/26.10)	GAAAETHYSKQLSELKSSK.AKFVCQH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.80|      18|      19|     395|     413|      10
---------------------------------------------------------------------------
  395-  413 (24.79/25.74)	IECDNAIKEVNqFRKLVEA
  417-  434 (31.00/25.73)	EHCIKNFFSIS.FSDIIEA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12267 with Med32 domain of Kingdom Viridiplantae
Unable to open file!